Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ARMC10P1-201ENST00000313754 855 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
FOXA3P55318 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
FOXA3P55318 AL645929.1-201ENST00000420084 975 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC12.05□□□□□ -0.48
FOXA3P55318 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 KRT8P26-201ENST00000534154 1276 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC12.05□□□□□ -0.48
FOXA3P55318 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 AC083849.1-201ENST00000615227 514 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 AF228730.7-201ENST00000641842 219 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 SLC22A20-204ENST00000530038 1673 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 MROH4P-201ENST00000431302 1578 ntBASIC12.05□□□□□ -0.48
FOXA3P55318 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 AC138969.2-201ENST00000532739 9932 ntBASIC12.04□□□□□ -0.48
FOXA3P55318 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
FOXA3P55318 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 HAUS4P1-201ENST00000406739 1145 ntBASIC12.04□□□□□ -0.48
FOXA3P55318 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA3P55318 AC087499.1-201ENST00000418141 1075 ntBASIC12.04□□□□□ -0.48
FOXA3P55318 AL137013.1-201ENST00000432946 1228 ntBASIC12.04□□□□□ -0.48
FOXA3P55318 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 AC087641.1-201ENST00000557561 1021 ntBASIC12.04□□□□□ -0.48
FOXA3P55318 CLN6-204ENST00000564752 900 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA3P55318 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA3P55318 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 CLN6-214ENST00000636314 442 ntTSL 3 BASIC12.04□□□□□ -0.48
FOXA3P55318 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 ABR-205ENST00000544583 5595 ntTSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms