Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA1P55317 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.46■□□□□ 0.06
FOXA1P55317 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA1P55317 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
FOXA1P55317 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.45■□□□□ 0.06
FOXA1P55317 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 AC127383.1-201ENST00000444697 1800 ntBASIC15.45■□□□□ 0.06
FOXA1P55317 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 MST1L-201ENST00000442552 2185 ntBASIC15.45■□□□□ 0.06
FOXA1P55317 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.45■□□□□ 0.06
FOXA1P55317 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA1P55317 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA1P55317 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 RPS8P6-201ENST00000426177 609 ntBASIC15.45■□□□□ 0.06
FOXA1P55317 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
FOXA1P55317 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA1P55317 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
FOXA1P55317 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
FOXA1P55317 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA1P55317 CICP24-201ENST00000605464 2705 ntBASIC15.45■□□□□ 0.06
FOXA1P55317 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXA1P55317 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 AC004987.2-201ENST00000395959 1148 ntBASIC15.44■□□□□ 0.06
FOXA1P55317 SPCS2P4-201ENST00000436160 681 ntBASIC15.44■□□□□ 0.06
FOXA1P55317 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.44■□□□□ 0.06
FOXA1P55317 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXA1P55317 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.44■□□□□ 0.06
FOXA1P55317 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 KRT8P48-201ENST00000515599 1220 ntBASIC15.44■□□□□ 0.06
FOXA1P55317 LINC01225-203ENST00000563550 1244 ntBASIC15.44■□□□□ 0.06
FOXA1P55317 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.44■□□□□ 0.06
FOXA1P55317 AP000842.3-202ENST00000569238 1080 ntBASIC15.44■□□□□ 0.06
FOXA1P55317 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXA1P55317 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA1P55317 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
FOXA1P55317 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA1P55317 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms