Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.08■□□□□ 0
SOX3P41225 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.08■□□□□ 0
SOX3P41225 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.08■□□□□ 0
SOX3P41225 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.08■□□□□ 0
SOX3P41225 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.08■□□□□ 0
SOX3P41225 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.08■□□□□ 0
SOX3P41225 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
SOX3P41225 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.07■□□□□ 0
SOX3P41225 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.07■□□□□ 0
SOX3P41225 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SOX3P41225 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SOX3P41225 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.07■□□□□ 0
SOX3P41225 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
SOX3P41225 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.07■□□□□ 0
SOX3P41225 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SOX3P41225 FAM220BP-201ENST00000377689 816 ntBASIC15.07■□□□□ 0
SOX3P41225 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
SOX3P41225 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.07■□□□□ 0
SOX3P41225 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.07■□□□□ 0
SOX3P41225 AC003101.2-201ENST00000612557 442 ntBASIC15.07■□□□□ 0
SOX3P41225 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SOX3P41225 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
SOX3P41225 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
SOX3P41225 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
SOX3P41225 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SOX3P41225 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.07■□□□□ 0
SOX3P41225 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.07■□□□□ 0
SOX3P41225 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX3P41225 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.07■□□□□ 0
SOX3P41225 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.07■□□□□ 0
SOX3P41225 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
SOX3P41225 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
SOX3P41225 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
SOX3P41225 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 FLJ16779-201ENST00000612722 7638 ntBASIC15.06■□□□□ 0
SOX3P41225 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.06■□□□□ 0
SOX3P41225 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.06■□□□□ 0
SOX3P41225 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
SOX3P41225 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 MIR770-201ENST00000390219 98 ntBASIC15.06■□□□□ 0
SOX3P41225 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.06■□□□□ 0
SOX3P41225 AC107890.1-201ENST00000422478 521 ntBASIC15.06■□□□□ 0
SOX3P41225 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.06■□□□□ 0
SOX3P41225 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.06■□□□□ 0
SOX3P41225 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.06■□□□□ 0
SOX3P41225 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.06■□□□□ 0
SOX3P41225 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.06■□□□□ 0
SOX3P41225 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.06■□□□□ 0
SOX3P41225 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.06■□□□□ 0
SOX3P41225 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SOX3P41225 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.06■□□□□ 0
SOX3P41225 AL589702.1-201ENST00000641229 1509 ntBASIC15.06■□□□□ 0
SOX3P41225 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SOX3P41225 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 AC005622.1-201ENST00000636801 1703 ntBASIC15.06■□□□□ 0
SOX3P41225 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.06■□□□□ 0
SOX3P41225 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SOX3P41225 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX3P41225 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX3P41225 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
SOX3P41225 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms