Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.17■□□□□ 0.5
SMARCA1P28370 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.17■□□□□ 0.5
SMARCA1P28370 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 TP53TG3HP-202ENST00000569755 579 ntBASIC18.17■□□□□ 0.5
SMARCA1P28370 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SMARCA1P28370 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.17■□□□□ 0.5
SMARCA1P28370 AL121723.1-201ENST00000445194 1519 ntBASIC18.17■□□□□ 0.5
SMARCA1P28370 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.17■□□□□ 0.5
SMARCA1P28370 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SMARCA1P28370 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SMARCA1P28370 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
SMARCA1P28370 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
SMARCA1P28370 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.16■□□□□ 0.5
SMARCA1P28370 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SMARCA1P28370 AC190387.1-201ENST00000551683 408 ntBASIC18.16■□□□□ 0.5
SMARCA1P28370 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.16■□□□□ 0.5
SMARCA1P28370 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.16■□□□□ 0.5
SMARCA1P28370 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.16■□□□□ 0.5
SMARCA1P28370 AL662799.1-202ENST00000614205 422 ntBASIC18.16■□□□□ 0.5
SMARCA1P28370 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.16■□□□□ 0.5
SMARCA1P28370 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
SMARCA1P28370 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.16■□□□□ 0.5
SMARCA1P28370 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SMARCA1P28370 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.16■□□□□ 0.5
SMARCA1P28370 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.16■□□□□ 0.5
SMARCA1P28370 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SMARCA1P28370 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SMARCA1P28370 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SMARCA1P28370 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SMARCA1P28370 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SMARCA1P28370 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
SMARCA1P28370 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.15■□□□□ 0.5
SMARCA1P28370 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.15■□□□□ 0.5
SMARCA1P28370 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SMARCA1P28370 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.15■□□□□ 0.5
SMARCA1P28370 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SMARCA1P28370 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.15■□□□□ 0.5
SMARCA1P28370 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.15■□□□□ 0.5
SMARCA1P28370 CHCHD2P3-201ENST00000603038 451 ntBASIC18.15■□□□□ 0.5
SMARCA1P28370 TMEM261P1-201ENST00000604899 340 ntBASIC18.15■□□□□ 0.5
SMARCA1P28370 AC093726.1-201ENST00000608064 963 ntBASIC18.15■□□□□ 0.5
SMARCA1P28370 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SMARCA1P28370 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms