Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL2A1P02458 AL645937.2-201ENST00000396808 931 ntBASIC18.3■□□□□ 0.52
COL2A1P02458 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 RN7SL560P-201ENST00000577943 264 ntBASIC18.3■□□□□ 0.52
COL2A1P02458 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.3■□□□□ 0.52
COL2A1P02458 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL2A1P02458 AC132938.4-201ENST00000623835 848 ntBASIC18.3■□□□□ 0.52
COL2A1P02458 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL2A1P02458 AC020907.1-201ENST00000616460 1350 ntBASIC18.3■□□□□ 0.52
COL2A1P02458 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.3■□□□□ 0.52
COL2A1P02458 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL2A1P02458 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL2A1P02458 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL2A1P02458 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.3■□□□□ 0.52
COL2A1P02458 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL2A1P02458 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL2A1P02458 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
COL2A1P02458 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
COL2A1P02458 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.29■□□□□ 0.52
COL2A1P02458 CD8B2-202ENST00000417670 633 ntBASIC18.29■□□□□ 0.52
COL2A1P02458 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC18.29■□□□□ 0.52
COL2A1P02458 AL590640.2-201ENST00000457038 527 ntBASIC18.29■□□□□ 0.52
COL2A1P02458 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.29■□□□□ 0.52
COL2A1P02458 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC18.29■□□□□ 0.52
COL2A1P02458 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 RN7SL48P-201ENST00000579283 293 ntBASIC18.29■□□□□ 0.52
COL2A1P02458 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.29■□□□□ 0.52
COL2A1P02458 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.29■□□□□ 0.52
COL2A1P02458 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.29■□□□□ 0.52
COL2A1P02458 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.29■□□□□ 0.52
COL2A1P02458 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.29■□□□□ 0.52
COL2A1P02458 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL2A1P02458 AC092364.2-201ENST00000596710 2692 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 AC084364.1-201ENST00000551967 1556 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL2A1P02458 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
COL2A1P02458 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 AC104457.1-201ENST00000401024 814 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 BRWD1P1-201ENST00000401091 371 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.28■□□□□ 0.52
COL2A1P02458 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.28■□□□□ 0.52
COL2A1P02458 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL2A1P02458 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.28■□□□□ 0.52
COL2A1P02458 RPL13AP20-201ENST00000459725 609 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 AC023310.1-201ENST00000554836 735 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.28■□□□□ 0.52
COL2A1P02458 RN7SL219P-201ENST00000582872 296 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 MIR6787-201ENST00000616675 61 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 AC006453.4-201ENST00000636949 1252 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL2A1P02458 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL2A1P02458 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.28■□□□□ 0.52
COL2A1P02458 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL2A1P02458 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 KRT8P14-201ENST00000414254 1442 ntBASIC18.28■□□□□ 0.52
COL2A1P02458 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL2A1P02458 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL2A1P02458 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms