Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
SIX3O95343 MIR346-201ENST00000362234 95 ntBASIC15.61■□□□□ 0.09
SIX3O95343 FAM220BP-201ENST00000377689 816 ntBASIC15.61■□□□□ 0.09
SIX3O95343 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 SPDYE11-202ENST00000450699 704 ntBASIC15.61■□□□□ 0.09
SIX3O95343 RN7SL589P-201ENST00000481268 310 ntBASIC15.61■□□□□ 0.09
SIX3O95343 POLD2P1-201ENST00000511220 997 ntBASIC15.61■□□□□ 0.09
SIX3O95343 PGAM5P1-201ENST00000518923 814 ntBASIC15.61■□□□□ 0.09
SIX3O95343 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.61■□□□□ 0.09
SIX3O95343 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.61■□□□□ 0.09
SIX3O95343 AC040169.1-201ENST00000565382 521 ntBASIC15.61■□□□□ 0.09
SIX3O95343 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 SPDYE9P-201ENST00000570642 692 ntBASIC15.61■□□□□ 0.09
SIX3O95343 MIR4313-201ENST00000580760 101 ntBASIC15.61■□□□□ 0.09
SIX3O95343 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.61■□□□□ 0.09
SIX3O95343 AC026120.1-201ENST00000611536 926 ntBASIC15.61■□□□□ 0.09
SIX3O95343 SPDYE10P-202ENST00000612005 668 ntBASIC15.61■□□□□ 0.09
SIX3O95343 SPDYE8P-202ENST00000612377 668 ntBASIC15.61■□□□□ 0.09
SIX3O95343 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.61■□□□□ 0.09
SIX3O95343 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
SIX3O95343 YBX2P1-201ENST00000394192 760 ntBASIC15.6■□□□□ 0.09
SIX3O95343 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.6■□□□□ 0.09
SIX3O95343 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 MCCD1P2-201ENST00000423228 335 ntBASIC15.6■□□□□ 0.09
SIX3O95343 RPS8P6-201ENST00000426177 609 ntBASIC15.6■□□□□ 0.09
SIX3O95343 TIMM8BP1-201ENST00000452384 211 ntBASIC15.6■□□□□ 0.09
SIX3O95343 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.6■□□□□ 0.09
SIX3O95343 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.6■□□□□ 0.09
SIX3O95343 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 LINC02228-204ENST00000642115 2962 ntBASIC15.6■□□□□ 0.09
SIX3O95343 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SIX3O95343 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SIX3O95343 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
SIX3O95343 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.59■□□□□ 0.09
SIX3O95343 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
SIX3O95343 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.59■□□□□ 0.09
SIX3O95343 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SIX3O95343 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.59■□□□□ 0.09
SIX3O95343 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms