Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM38O00635 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.11■□□□□ 0.17
TRIM38O00635 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM38O00635 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM38O00635 AL596325.1-201ENST00000563991 1082 ntBASIC16.11■□□□□ 0.17
TRIM38O00635 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
TRIM38O00635 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 AC027307.3-201ENST00000594262 1100 ntBASIC16.11■□□□□ 0.17
TRIM38O00635 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM38O00635 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 AL671710.1-201ENST00000610245 2349 ntBASIC16.11■□□□□ 0.17
TRIM38O00635 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM38O00635 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM38O00635 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
TRIM38O00635 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TRIM38O00635 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRIM38O00635 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM38O00635 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 SPTLC1P1-201ENST00000447199 261 ntBASIC16.1■□□□□ 0.17
TRIM38O00635 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM38O00635 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM38O00635 AC004233.3-201ENST00000607794 1269 ntBASIC16.1■□□□□ 0.17
TRIM38O00635 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM38O00635 AL358472.5-202ENST00000641448 1267 ntBASIC16.1■□□□□ 0.17
TRIM38O00635 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 AC073439.1-201ENST00000624121 1774 ntBASIC16.1■□□□□ 0.17
TRIM38O00635 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM38O00635 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM38O00635 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
TRIM38O00635 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM38O00635 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM38O00635 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.09■□□□□ 0.17
TRIM38O00635 SPTSSB-204ENST00000617024 1292 ntBASIC16.09■□□□□ 0.17
TRIM38O00635 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM38O00635 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM38O00635 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms