Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TCRBV7S3A2A0A539 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TCRBV7S3A2A0A539 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TCRBV7S3A2A0A539 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TCRBV7S3A2A0A539 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
TCRBV7S3A2A0A539 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TCRBV7S3A2A0A539 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 MCCD1P2-201ENST00000423228 335 ntBASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SPDYE11-202ENST00000450699 704 ntBASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 FAM86C2P-203ENST00000528684 1004 ntBASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SPDYE9P-201ENST00000570642 692 ntBASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SPDYE10P-202ENST00000612005 668 ntBASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SPDYE8P-202ENST00000612377 668 ntBASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TCRBV7S3A2A0A539 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TCRBV7S3A2A0A539 AP3S2-216ENST00000617003 1561 ntBASIC16.21■□□□□ 0.18
TCRBV7S3A2A0A539 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TCRBV7S3A2A0A539 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TCRBV7S3A2A0A539 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TCRBV7S3A2A0A539 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TCRBV7S3A2A0A539 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 AC026396.1-201ENST00000419388 421 ntBASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 TIMM8BP1-201ENST00000452384 211 ntBASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 RN7SL589P-201ENST00000481268 310 ntBASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 AC069335.1-201ENST00000489972 472 ntBASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 SLC25A39P2-201ENST00000537614 270 ntBASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.2■□□□□ 0.18
TCRBV7S3A2A0A539 KRT8P37-201ENST00000451609 1420 ntBASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms