Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC020658.6-201ENST00000623564 1870 ntBASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC006058.4-201ENST00000624016 1670 ntBASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RHBDD3Q9Y3P4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 AC099522.2-201ENST00000607001 744 ntBASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 AC136621.1-201ENST00000624017 2304 ntBASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.03□□□□□ -0.16
RHBDD3Q9Y3P4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms