Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
TM9SF3Q9HD45 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 AC005622.1-201ENST00000636801 1703 ntBASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 AC112492.5-201ENST00000421897 457 ntBASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 KRT17P8-201ENST00000540749 863 ntBASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 AC093726.1-201ENST00000608064 963 ntBASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 HLA-A-202ENST00000376806 1854 ntBASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TM9SF3Q9HD45 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC007950.2-201ENST00000615045 2347 ntBASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC098850.1-201ENST00000419919 790 ntBASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 TTTY23B-201ENST00000442790 549 ntBASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC106886.1-201ENST00000568660 600 ntBASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC092337.1-201ENST00000568699 1129 ntBASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 AC074044.1-201ENST00000609673 707 ntBASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TM9SF3Q9HD45 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
TM9SF3Q9HD45 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TM9SF3Q9HD45 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.96■□□□□ 0.14
TM9SF3Q9HD45 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.96■□□□□ 0.14
TM9SF3Q9HD45 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms