Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 AC009118.2-201ENST00000613275 655 ntBASIC18.77■□□□□ 0.6
RNF41Q9H4P4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
RNF41Q9H4P4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
RNF41Q9H4P4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.77■□□□□ 0.59
RNF41Q9H4P4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.77■□□□□ 0.59
RNF41Q9H4P4 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RNF41Q9H4P4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 FAM207CP-201ENST00000443486 507 ntBASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 TSPY16P-201ENST00000449843 468 ntBASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 MIR4313-201ENST00000580760 101 ntBASIC18.76■□□□□ 0.59
RNF41Q9H4P4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AC004840.1-201ENST00000636359 365 ntBASIC18.76■□□□□ 0.59
RNF41Q9H4P4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 AC022188.1-201ENST00000620960 1664 ntBASIC18.76■□□□□ 0.59
RNF41Q9H4P4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
RNF41Q9H4P4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RNF41Q9H4P4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms