Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AC073621.1-201ENST00000392730 636 ntBASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AC034105.1-201ENST00000563488 319 ntBASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AC140113.2-201ENST00000604370 208 ntBASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AC139530.3-201ENST00000620344 690 ntBASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AP001350.2-201ENST00000625104 1094 ntBASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DEPDC4Q8N2C3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 SBF1P1-201ENST00000444527 5631 ntBASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 AC009947.1-201ENST00000444350 727 ntBASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 RPS15P9-201ENST00000494093 319 ntBASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 AC040169.1-201ENST00000565382 521 ntBASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 MIR4751-201ENST00000578027 74 ntBASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 AC079781.5-202ENST00000641784 3743 ntBASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DEPDC4Q8N2C3 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms