Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC21.32■■□□□ 1
NPHP3Q7Z494 AL133466.1-201ENST00000447582 150 ntBASIC21.32■■□□□ 1
NPHP3Q7Z494 SPTLC1P5-201ENST00000450718 252 ntBASIC21.32■■□□□ 1
NPHP3Q7Z494 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 AC044849.1-201ENST00000519737 1188 ntBASIC21.32■■□□□ 1
NPHP3Q7Z494 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
NPHP3Q7Z494 KLK11-210ENST00000600362 759 ntTSL 3 BASIC21.32■■□□□ 1
NPHP3Q7Z494 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC21.32■■□□□ 1
NPHP3Q7Z494 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
NPHP3Q7Z494 AC007663.3-201ENST00000609632 465 ntBASIC21.32■■□□□ 1
NPHP3Q7Z494 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC21.32■■□□□ 1
NPHP3Q7Z494 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.32■■□□□ 1
NPHP3Q7Z494 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.32■■□□□ 1
NPHP3Q7Z494 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NPHP3Q7Z494 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC21.32■■□□□ 1
NPHP3Q7Z494 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
NPHP3Q7Z494 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP3Q7Z494 RNU1-114P-201ENST00000365297 166 ntBASIC21.31■■□□□ 1
NPHP3Q7Z494 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 KLF2P2-201ENST00000416807 1039 ntBASIC21.31■■□□□ 1
NPHP3Q7Z494 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 ATP6V0CP2-201ENST00000469409 207 ntBASIC21.31■■□□□ 1
NPHP3Q7Z494 SERPINA13P-202ENST00000478994 924 ntBASIC21.31■■□□□ 1
NPHP3Q7Z494 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC21.31■■□□□ 1
NPHP3Q7Z494 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 SDHD-202ENST00000525291 790 ntTSL 3 BASIC21.31■■□□□ 1
NPHP3Q7Z494 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC21.31■■□□□ 1
NPHP3Q7Z494 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NPHP3Q7Z494 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.31■■□□□ 1
NPHP3Q7Z494 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NPHP3Q7Z494 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
NPHP3Q7Z494 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP3Q7Z494 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.31■■□□□ 1
NPHP3Q7Z494 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 TPM3P8-201ENST00000330554 643 ntBASIC21.3■■□□□ 1
NPHP3Q7Z494 TISP43-201ENST00000409793 538 ntTSL 4 BASIC21.3■■□□□ 1
NPHP3Q7Z494 HNRNPA1P63-201ENST00000427917 963 ntBASIC21.3■■□□□ 1
NPHP3Q7Z494 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC21.3■■□□□ 1
NPHP3Q7Z494 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
NPHP3Q7Z494 FTLP1-201ENST00000449155 526 ntBASIC21.3■■□□□ 1
NPHP3Q7Z494 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC21.3■■□□□ 1
NPHP3Q7Z494 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC21.3■■□□□ 1
NPHP3Q7Z494 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AC244157.2-201ENST00000616239 1006 ntBASIC21.3■■□□□ 1
NPHP3Q7Z494 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.3■■□□□ 1
NPHP3Q7Z494 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC21.3■■□□□ 1
NPHP3Q7Z494 AC092978.1-202ENST00000637590 1327 ntBASIC21.3■■□□□ 1
NPHP3Q7Z494 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.3■■□□□ 1
NPHP3Q7Z494 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.3■■□□□ 1
NPHP3Q7Z494 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP3Q7Z494 POLL-217ENST00000628479 1953 ntTSL 5 BASIC21.3■■□□□ 1
NPHP3Q7Z494 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC21.29■■□□□ 1
NPHP3Q7Z494 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
NPHP3Q7Z494 RAC2-202ENST00000401529 569 ntTSL 4 BASIC21.29■■□□□ 1
NPHP3Q7Z494 FTLP10-202ENST00000505798 471 ntBASIC21.29■■□□□ 1
NPHP3Q7Z494 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC21.29■■□□□ 1
NPHP3Q7Z494 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC21.29■■□□□ 1
NPHP3Q7Z494 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC21.29■■□□□ 1
NPHP3Q7Z494 MIR7845-201ENST00000618396 99 ntBASIC21.29■■□□□ 1
NPHP3Q7Z494 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC21.29■■□□□ 1
NPHP3Q7Z494 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP3Q7Z494 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP3Q7Z494 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP3Q7Z494 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP3Q7Z494 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms