Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 THY1-209ENST00000580275 578 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC090164.2-201ENST00000611487 516 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 LINC02012-201ENST00000608206 1725 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC11.2□□□□□ -0.62
PRKDCP78527 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC005041.3-201ENST00000606287 649 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 AP000356.3-201ENST00000382243 753 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 AC130709.1-201ENST00000484779 1212 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 LINC00634-202ENST00000505157 222 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 PMEL-214ENST00000550447 901 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC005324.6-201ENST00000587972 613 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 AC009093.2-202ENST00000620513 2079 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC018463.1-201ENST00000456674 917 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC009779.1-201ENST00000551138 283 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 IRF3-215ENST00000596822 823 ntTSL 3 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC011247.3-201ENST00000603297 438 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC004408.2-201ENST00000623613 2777 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC004686.1-201ENST00000605113 538 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 AC024293.1-201ENST00000467930 498 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC11.19□□□□□ -0.62
PRKDCP78527 AC106820.3-201ENST00000561653 397 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 MIR6816-201ENST00000620368 66 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
PRKDCP78527 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC11.19□□□□□ -0.62
PRKDCP78527 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC11.19□□□□□ -0.62
PRKDCP78527 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
PRKDCP78527 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
PRKDCP78527 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
PRKDCP78527 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
PRKDCP78527 PCDHB18P-201ENST00000524813 2368 ntBASIC11.18□□□□□ -0.62
PRKDCP78527 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
PRKDCP78527 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
PRKDCP78527 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC11.18□□□□□ -0.62
PRKDCP78527 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC11.18□□□□□ -0.62
PRKDCP78527 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC11.18□□□□□ -0.62
PRKDCP78527 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC11.18□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms