Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.94□□□□□ -0.34
CX3CL1P78423 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.94□□□□□ -0.34
CX3CL1P78423 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.94□□□□□ -0.34
CX3CL1P78423 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 LINC01225-203ENST00000563550 1244 ntBASIC12.94□□□□□ -0.34
CX3CL1P78423 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
CX3CL1P78423 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 AL365330.1-201ENST00000607459 531 ntBASIC12.94□□□□□ -0.34
CX3CL1P78423 SPTSSB-204ENST00000617024 1292 ntBASIC12.94□□□□□ -0.34
CX3CL1P78423 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
CX3CL1P78423 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
CX3CL1P78423 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.94□□□□□ -0.34
CX3CL1P78423 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CL1P78423 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 UXT-AS1-201ENST00000590504 1525 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 MIR346-201ENST00000362234 95 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 KRT18P13-201ENST00000400056 1290 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 AC211486.1-202ENST00000416371 468 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC211476.1-201ENST00000503899 468 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.93□□□□□ -0.34
CX3CL1P78423 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.93□□□□□ -0.34
CX3CL1P78423 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.93□□□□□ -0.34
CX3CL1P78423 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.93□□□□□ -0.34
CX3CL1P78423 AP000842.3-202ENST00000569238 1080 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC022145.2-201ENST00000598203 171 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 AL513210.1-201ENST00000629608 234 ntBASIC12.93□□□□□ -0.34
CX3CL1P78423 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CX3CL1P78423 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.93□□□□□ -0.34
CX3CL1P78423 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CL1P78423 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CX3CL1P78423 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms