Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.79□□□□□ -0.04
RNF4P78317 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.79□□□□□ -0.04
RNF4P78317 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.79□□□□□ -0.04
RNF4P78317 SDHAP3-202ENST00000515467 728 ntBASIC14.79□□□□□ -0.04
RNF4P78317 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.79□□□□□ -0.04
RNF4P78317 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 AC044860.1-202ENST00000559481 777 ntBASIC14.79□□□□□ -0.04
RNF4P78317 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.79□□□□□ -0.04
RNF4P78317 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.79□□□□□ -0.04
RNF4P78317 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
RNF4P78317 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
RNF4P78317 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
RNF4P78317 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 LINC02447-202ENST00000501888 2146 ntBASIC14.78□□□□□ -0.04
RNF4P78317 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
RNF4P78317 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 CDC14C-201ENST00000428251 1719 ntBASIC14.78□□□□□ -0.04
RNF4P78317 BTBD7P1-201ENST00000447253 1453 ntBASIC14.78□□□□□ -0.04
RNF4P78317 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.78□□□□□ -0.04
RNF4P78317 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 AC103702.1-201ENST00000548801 2630 ntBASIC14.78□□□□□ -0.04
RNF4P78317 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
RNF4P78317 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 PHKG1P2-201ENST00000457537 863 ntBASIC14.78□□□□□ -0.04
RNF4P78317 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.78□□□□□ -0.04
RNF4P78317 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
RNF4P78317 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.78□□□□□ -0.04
RNF4P78317 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.78□□□□□ -0.04
RNF4P78317 AC008738.7-201ENST00000609744 511 ntBASIC14.78□□□□□ -0.04
RNF4P78317 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.78□□□□□ -0.04
RNF4P78317 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
RNF4P78317 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.78□□□□□ -0.04
RNF4P78317 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
RNF4P78317 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 AL513523.2-202ENST00000427283 2040 ntBASIC14.77□□□□□ -0.04
RNF4P78317 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RNF4P78317 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.77□□□□□ -0.05
RNF4P78317 FAM207CP-201ENST00000443486 507 ntBASIC14.77□□□□□ -0.05
RNF4P78317 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.77□□□□□ -0.05
RNF4P78317 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
RNF4P78317 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.77□□□□□ -0.05
RNF4P78317 AL450472.2-201ENST00000603663 1156 ntBASIC14.77□□□□□ -0.05
RNF4P78317 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.77□□□□□ -0.05
RNF4P78317 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.77□□□□□ -0.05
RNF4P78317 AL109936.8-201ENST00000641772 604 ntBASIC14.77□□□□□ -0.05
RNF4P78317 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.77□□□□□ -0.05
RNF4P78317 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
RNF4P78317 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.77□□□□□ -0.05
RNF4P78317 AL603832.2-201ENST00000566195 2125 ntBASIC14.77□□□□□ -0.05
RNF4P78317 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RNF4P78317 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms