Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 AP005901.3-202ENST00000581653 237 ntBASIC12.07□□□□□ -0.48
FOXA3P55318 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.07□□□□□ -0.48
FOXA3P55318 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC12.07□□□□□ -0.48
FOXA3P55318 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.07□□□□□ -0.48
FOXA3P55318 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 AP006294.2-201ENST00000641667 209 ntBASIC12.07□□□□□ -0.48
FOXA3P55318 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
FOXA3P55318 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 AC005912.2-201ENST00000619492 2400 ntBASIC12.07□□□□□ -0.48
FOXA3P55318 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
FOXA3P55318 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
FOXA3P55318 AC112693.3-201ENST00000624819 1983 ntBASIC12.07□□□□□ -0.48
FOXA3P55318 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
FOXA3P55318 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.06□□□□□ -0.48
FOXA3P55318 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.06□□□□□ -0.48
FOXA3P55318 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
FOXA3P55318 RNF152P1-201ENST00000397754 604 ntBASIC12.06□□□□□ -0.48
FOXA3P55318 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC12.06□□□□□ -0.48
FOXA3P55318 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 AP001350.2-201ENST00000625104 1094 ntBASIC12.06□□□□□ -0.48
FOXA3P55318 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 AC079776.2-201ENST00000641154 1609 ntBASIC12.06□□□□□ -0.48
FOXA3P55318 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 AL353732.1-201ENST00000569618 1459 ntBASIC12.06□□□□□ -0.48
FOXA3P55318 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
FOXA3P55318 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
FOXA3P55318 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
FOXA3P55318 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.05□□□□□ -0.48
FOXA3P55318 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
FOXA3P55318 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
FOXA3P55318 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms