Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH6P55285 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH6P55285 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.63■□□□□ 0.25
CDH6P55285 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH6P55285 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CDH6P55285 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.63■□□□□ 0.25
CDH6P55285 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH6P55285 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 MIR1233-2-201ENST00000408138 82 ntBASIC16.63■□□□□ 0.25
CDH6P55285 MIR1233-1-201ENST00000408722 82 ntBASIC16.63■□□□□ 0.25
CDH6P55285 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH6P55285 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH6P55285 AC004967.1-201ENST00000453589 447 ntBASIC16.63■□□□□ 0.25
CDH6P55285 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH6P55285 AC026979.3-201ENST00000607315 403 ntBASIC16.63■□□□□ 0.25
CDH6P55285 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH6P55285 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CDH6P55285 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CDH6P55285 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CDH6P55285 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
CDH6P55285 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH6P55285 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH6P55285 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDH6P55285 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 AC068587.6-202ENST00000641839 5619 ntBASIC16.62■□□□□ 0.25
CDH6P55285 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDH6P55285 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 RBPMS2P1-201ENST00000437762 623 ntBASIC16.62■□□□□ 0.25
CDH6P55285 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH6P55285 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.62■□□□□ 0.25
CDH6P55285 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 AC134684.3-201ENST00000641758 218 ntBASIC16.62■□□□□ 0.25
CDH6P55285 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH6P55285 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDH6P55285 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDH6P55285 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH6P55285 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CDH6P55285 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH6P55285 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH6P55285 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CDH6P55285 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 PKD1P5-201ENST00000532415 10291 ntBASIC16.61■□□□□ 0.25
CDH6P55285 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.61■□□□□ 0.25
CDH6P55285 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.61■□□□□ 0.25
CDH6P55285 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.61■□□□□ 0.25
CDH6P55285 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CDH6P55285 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
CDH6P55285 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms