Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AC023274.1-201ENST00000418278 595 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 AC026396.1-201ENST00000419388 421 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 FAM58CP-201ENST00000435741 640 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 AL135744.1-201ENST00000565098 629 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.1□□□□□ -0.15
CX3CR1P49238 AC073389.1-201ENST00000595595 795 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.1□□□□□ -0.15
CX3CR1P49238 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.1□□□□□ -0.15
CX3CR1P49238 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 SPTSSB-204ENST00000617024 1292 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 AKAP8P1-201ENST00000434743 1349 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CX3CR1P49238 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC011477.6-201ENST00000604980 1927 ntBASIC14.09□□□□□ -0.15
CX3CR1P49238 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.09□□□□□ -0.15
CX3CR1P49238 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 TFAMP1-201ENST00000412727 736 ntBASIC14.09□□□□□ -0.15
CX3CR1P49238 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.09□□□□□ -0.15
CX3CR1P49238 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AL671277.1-201ENST00000429656 993 ntBASIC14.09□□□□□ -0.15
CX3CR1P49238 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC098859.1-201ENST00000502915 1238 ntBASIC14.09□□□□□ -0.15
CX3CR1P49238 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.09□□□□□ -0.15
CX3CR1P49238 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CX3CR1P49238 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.09□□□□□ -0.15
CX3CR1P49238 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.09□□□□□ -0.15
CX3CR1P49238 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.09□□□□□ -0.15
CX3CR1P49238 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
CX3CR1P49238 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 AC134407.2-201ENST00000625089 1978 ntBASIC14.09□□□□□ -0.15
CX3CR1P49238 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CX3CR1P49238 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CR1P49238 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
CX3CR1P49238 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CR1P49238 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CX3CR1P49238 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CR1P49238 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CX3CR1P49238 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms