Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HOXD3P31249 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 PCDH8P1-201ENST00000428983 2773 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXD3P31249 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 HAUS4P1-201ENST00000406739 1145 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 ATP5G2P4-201ENST00000442175 420 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.37□□□□□ -0.43
HOXD3P31249 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC243562.2-201ENST00000561247 970 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXD3P31249 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC104794.3-201ENST00000566840 1248 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 TP53TG3HP-202ENST00000569755 579 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 AL844908.2-201ENST00000609461 460 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC004840.1-201ENST00000636359 365 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC138969.3-201ENST00000546612 1459 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 AC138932.2-201ENST00000548268 1459 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 AC126755.4-201ENST00000549796 1459 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.37□□□□□ -0.43
HOXD3P31249 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXD3P31249 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
HOXD3P31249 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 AL139384.1-201ENST00000612143 3047 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.37□□□□□ -0.43
HOXD3P31249 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HOXD3P31249 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HOXD3P31249 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.37□□□□□ -0.43
HOXD3P31249 CU639417.3-201ENST00000624240 1404 ntBASIC12.37□□□□□ -0.43
HOXD3P31249 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HOXD3P31249 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXD3P31249 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC12.36□□□□□ -0.43
HOXD3P31249 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.36□□□□□ -0.43
HOXD3P31249 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
HOXD3P31249 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.36□□□□□ -0.43
HOXD3P31249 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 MTHFR-217ENST00000641820 1569 ntBASIC12.36□□□□□ -0.43
HOXD3P31249 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
HOXD3P31249 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HOXD3P31249 AL118508.1-201ENST00000613502 2345 ntBASIC12.36□□□□□ -0.43
HOXD3P31249 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
HOXD3P31249 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.36□□□□□ -0.43
HOXD3P31249 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HOXD3P31249 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms