Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.21■□□□□ 0.51
SMARCA1P28370 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.21■□□□□ 0.51
SMARCA1P28370 SPDYE22P-201ENST00000582158 798 ntBASIC18.21■□□□□ 0.51
SMARCA1P28370 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SMARCA1P28370 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.21■□□□□ 0.51
SMARCA1P28370 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 AL158212.4-201ENST00000624062 1286 ntBASIC18.21■□□□□ 0.51
SMARCA1P28370 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.21■□□□□ 0.51
SMARCA1P28370 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.21■□□□□ 0.51
SMARCA1P28370 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
SMARCA1P28370 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.21■□□□□ 0.5
SMARCA1P28370 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 AC007541.1-201ENST00000570282 1469 ntBASIC18.2■□□□□ 0.5
SMARCA1P28370 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.2■□□□□ 0.5
SMARCA1P28370 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.2■□□□□ 0.5
SMARCA1P28370 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.2■□□□□ 0.5
SMARCA1P28370 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.2■□□□□ 0.5
SMARCA1P28370 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.2■□□□□ 0.5
SMARCA1P28370 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
SMARCA1P28370 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
SMARCA1P28370 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SMARCA1P28370 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMARCA1P28370 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.19■□□□□ 0.5
SMARCA1P28370 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.19■□□□□ 0.5
SMARCA1P28370 CRB3P1-201ENST00000449338 276 ntBASIC18.19■□□□□ 0.5
SMARCA1P28370 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.19■□□□□ 0.5
SMARCA1P28370 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 AC015910.1-201ENST00000579400 975 ntBASIC18.19■□□□□ 0.5
SMARCA1P28370 AL132655.2-201ENST00000596276 594 ntBASIC18.19■□□□□ 0.5
SMARCA1P28370 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.19■□□□□ 0.5
SMARCA1P28370 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.19■□□□□ 0.5
SMARCA1P28370 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.19■□□□□ 0.5
SMARCA1P28370 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SMARCA1P28370 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
SMARCA1P28370 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.19■□□□□ 0.5
SMARCA1P28370 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SMARCA1P28370 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SMARCA1P28370 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SMARCA1P28370 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 KRT18P43-201ENST00000469825 1281 ntBASIC18.18■□□□□ 0.5
SMARCA1P28370 RN7SL399P-201ENST00000471648 279 ntBASIC18.18■□□□□ 0.5
SMARCA1P28370 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.18■□□□□ 0.5
SMARCA1P28370 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
SMARCA1P28370 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.18■□□□□ 0.5
SMARCA1P28370 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.18■□□□□ 0.5
SMARCA1P28370 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SMARCA1P28370 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SMARCA1P28370 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms