Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.29■□□□□ 0.2
COL9A1P20849 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.29■□□□□ 0.2
COL9A1P20849 DNM1P51-201ENST00000558149 522 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 AL096828.3-201ENST00000615354 462 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 AC138649.2-201ENST00000615886 705 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
COL9A1P20849 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.29■□□□□ 0.2
COL9A1P20849 CYP4F24P-201ENST00000586049 1580 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
COL9A1P20849 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
COL9A1P20849 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.28■□□□□ 0.2
COL9A1P20849 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.28■□□□□ 0.2
COL9A1P20849 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL9A1P20849 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL9A1P20849 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.28■□□□□ 0.2
COL9A1P20849 EIF2S2P5-201ENST00000457635 968 ntBASIC16.28■□□□□ 0.2
COL9A1P20849 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.28■□□□□ 0.2
COL9A1P20849 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.28■□□□□ 0.2
COL9A1P20849 AC036164.1-201ENST00000570544 333 ntBASIC16.28■□□□□ 0.2
COL9A1P20849 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.28■□□□□ 0.2
COL9A1P20849 RN7SL574P-201ENST00000581512 297 ntBASIC16.28■□□□□ 0.2
COL9A1P20849 EIF5AP2-201ENST00000585668 1047 ntBASIC16.28■□□□□ 0.2
COL9A1P20849 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 AC074044.1-201ENST00000609673 707 ntBASIC16.28■□□□□ 0.2
COL9A1P20849 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL9A1P20849 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL9A1P20849 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.28■□□□□ 0.2
COL9A1P20849 AC078925.2-201ENST00000624013 1973 ntBASIC16.27■□□□□ 0.2
COL9A1P20849 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
COL9A1P20849 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 UBALD1-205ENST00000590891 2641 ntBASIC16.27■□□□□ 0.2
COL9A1P20849 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.27■□□□□ 0.2
COL9A1P20849 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL9A1P20849 C20orf85-201ENST00000371168 803 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC16.27■□□□□ 0.2
COL9A1P20849 HOMER2P2-201ENST00000451621 847 ntBASIC16.27■□□□□ 0.2
COL9A1P20849 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.27■□□□□ 0.2
COL9A1P20849 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.27■□□□□ 0.2
COL9A1P20849 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.27■□□□□ 0.2
COL9A1P20849 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.27■□□□□ 0.2
COL9A1P20849 AC009486.1-201ENST00000569860 813 ntBASIC16.27■□□□□ 0.2
COL9A1P20849 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.27■□□□□ 0.2
COL9A1P20849 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.27■□□□□ 0.2
COL9A1P20849 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
COL9A1P20849 MIR4321-201ENST00000592276 80 ntBASIC16.27■□□□□ 0.2
COL9A1P20849 AC005702.4-201ENST00000618393 416 ntBASIC16.27■□□□□ 0.2
COL9A1P20849 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL9A1P20849 LINC01144-201ENST00000626198 1710 ntBASIC16.27■□□□□ 0.19
COL9A1P20849 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
COL9A1P20849 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL9A1P20849 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL9A1P20849 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.27■□□□□ 0.19
COL9A1P20849 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL9A1P20849 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL9A1P20849 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL9A1P20849 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL9A1P20849 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.26■□□□□ 0.19
COL9A1P20849 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms