Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL6A2P12110 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
COL6A2P12110 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A2P12110 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A2P12110 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A2P12110 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 FOXO1B-201ENST00000504678 1527 ntBASIC15.81■□□□□ 0.12
COL6A2P12110 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A2P12110 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
COL6A2P12110 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL6A2P12110 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.81■□□□□ 0.12
COL6A2P12110 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A2P12110 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.81■□□□□ 0.12
COL6A2P12110 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
COL6A2P12110 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A2P12110 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A2P12110 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
COL6A2P12110 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
COL6A2P12110 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
COL6A2P12110 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 RPS8P6-201ENST00000426177 609 ntBASIC15.8■□□□□ 0.12
COL6A2P12110 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A2P12110 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A2P12110 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.8■□□□□ 0.12
COL6A2P12110 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A2P12110 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A2P12110 AC008267.7-201ENST00000624570 1194 ntBASIC15.8■□□□□ 0.12
COL6A2P12110 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A2P12110 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A2P12110 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A2P12110 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL6A2P12110 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A2P12110 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A2P12110 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A2P12110 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL6A2P12110 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A2P12110 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
COL6A2P12110 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms