Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 AC097359.3-201ENST00000603982 1210 ntBASIC18.81■□□□□ 0.6
HMGB1P09429 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.81■□□□□ 0.6
HMGB1P09429 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HMGB1P09429 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB1P09429 TMBIM7P-203ENST00000641617 1718 ntBASIC18.8■□□□□ 0.6
HMGB1P09429 AC092850.2-201ENST00000623821 2697 ntBASIC18.8■□□□□ 0.6
HMGB1P09429 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB1P09429 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGB1P09429 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HMGB1P09429 AZGP1P1-201ENST00000411909 902 ntBASIC18.8■□□□□ 0.6
HMGB1P09429 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
HMGB1P09429 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB1P09429 MTND6P24-201ENST00000440466 518 ntBASIC18.8■□□□□ 0.6
HMGB1P09429 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
HMGB1P09429 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
HMGB1P09429 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGB1P09429 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HMGB1P09429 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
HMGB1P09429 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.8■□□□□ 0.6
HMGB1P09429 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGB1P09429 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HMGB1P09429 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGB1P09429 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB1P09429 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
HMGB1P09429 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 AC092384.3-202ENST00000564646 2873 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
HMGB1P09429 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
HMGB1P09429 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB1P09429 TSEN15P1-201ENST00000423257 515 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 HIST3H2BA-201ENST00000436555 524 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB1P09429 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB1P09429 AL079307.3-201ENST00000556114 283 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 AL691403.2-201ENST00000618460 490 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB1P09429 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB1P09429 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.79■□□□□ 0.6
HMGB1P09429 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGB1P09429 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HMGB1P09429 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 SSR4P1-203ENST00000599569 2260 ntBASIC18.79■□□□□ 0.6
HMGB1P09429 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB1P09429 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms