Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.45□□□□□ -0.42
CXCL1P09341 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
CXCL1P09341 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC12.45□□□□□ -0.42
CXCL1P09341 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 AC112907.2-201ENST00000448639 330 ntBASIC12.45□□□□□ -0.42
CXCL1P09341 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC12.45□□□□□ -0.42
CXCL1P09341 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.45□□□□□ -0.42
CXCL1P09341 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
CXCL1P09341 SNX33P1-201ENST00000592116 1762 ntBASIC12.45□□□□□ -0.42
CXCL1P09341 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CXCL1P09341 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.45□□□□□ -0.42
CXCL1P09341 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
CXCL1P09341 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CXCL1P09341 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
CXCL1P09341 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CXCL1P09341 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.44□□□□□ -0.42
CXCL1P09341 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CXCL1P09341 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 RNF152P1-201ENST00000397754 604 ntBASIC12.44□□□□□ -0.42
CXCL1P09341 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC12.44□□□□□ -0.42
CXCL1P09341 TSPY5P-201ENST00000426936 936 ntBASIC12.44□□□□□ -0.42
CXCL1P09341 KRT18P38-201ENST00000449496 1282 ntBASIC12.44□□□□□ -0.42
CXCL1P09341 VENTXP7-201ENST00000475503 772 ntBASIC12.44□□□□□ -0.42
CXCL1P09341 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC12.44□□□□□ -0.42
CXCL1P09341 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.44□□□□□ -0.42
CXCL1P09341 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.44□□□□□ -0.42
CXCL1P09341 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC12.44□□□□□ -0.42
CXCL1P09341 AC139887.4-201ENST00000607877 719 ntBASIC12.44□□□□□ -0.42
CXCL1P09341 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 PCGF3-213ENST00000620529 1899 ntBASIC12.44□□□□□ -0.42
CXCL1P09341 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
CXCL1P09341 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.44□□□□□ -0.42
CXCL1P09341 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC12.43□□□□□ -0.42
CXCL1P09341 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms