Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VIMP08670 MINOS1P3-201ENST00000457048 203 ntBASIC16.13■□□□□ 0.17
VIMP08670 AC087163.2-201ENST00000457299 853 ntBASIC16.13■□□□□ 0.17
VIMP08670 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.13■□□□□ 0.17
VIMP08670 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 AC087641.1-201ENST00000557561 1021 ntBASIC16.13■□□□□ 0.17
VIMP08670 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 AC073592.4-201ENST00000623827 446 ntBASIC16.13■□□□□ 0.17
VIMP08670 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
VIMP08670 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VIMP08670 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VIMP08670 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 AC079776.2-201ENST00000641154 1609 ntBASIC16.12■□□□□ 0.17
VIMP08670 NCF1C-201ENST00000438382 1427 ntBASIC16.12■□□□□ 0.17
VIMP08670 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 KRT8P26-201ENST00000534154 1276 ntBASIC16.12■□□□□ 0.17
VIMP08670 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.12■□□□□ 0.17
VIMP08670 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 FGD5P1-202ENST00000614866 2498 ntBASIC16.12■□□□□ 0.17
VIMP08670 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
VIMP08670 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VIMP08670 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.12■□□□□ 0.17
VIMP08670 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VIMP08670 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 AL353732.1-201ENST00000569618 1459 ntBASIC16.11■□□□□ 0.17
VIMP08670 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.11■□□□□ 0.17
VIMP08670 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.11■□□□□ 0.17
VIMP08670 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.11■□□□□ 0.17
VIMP08670 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms