Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.74■□□□□ 0.27
RB1P06400 AC097359.3-201ENST00000603982 1210 ntBASIC16.74■□□□□ 0.27
RB1P06400 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.74■□□□□ 0.27
RB1P06400 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.74■□□□□ 0.27
RB1P06400 AL008638.5-201ENST00000623814 1298 ntBASIC16.74■□□□□ 0.27
RB1P06400 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
RB1P06400 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RB1P06400 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RB1P06400 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RB1P06400 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
RB1P06400 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.73■□□□□ 0.27
RB1P06400 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.73■□□□□ 0.27
RB1P06400 AC004898.1-201ENST00000451057 766 ntBASIC16.73■□□□□ 0.27
RB1P06400 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.73■□□□□ 0.27
RB1P06400 AP001582.1-201ENST00000525856 295 ntBASIC16.73■□□□□ 0.27
RB1P06400 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RB1P06400 AC078819.1-201ENST00000547454 765 ntBASIC16.73■□□□□ 0.27
RB1P06400 AC012085.1-201ENST00000548270 765 ntBASIC16.73■□□□□ 0.27
RB1P06400 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.73■□□□□ 0.27
RB1P06400 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.73■□□□□ 0.27
RB1P06400 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.73■□□□□ 0.27
RB1P06400 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.73■□□□□ 0.27
RB1P06400 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.73■□□□□ 0.27
RB1P06400 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.73■□□□□ 0.27
RB1P06400 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.73■□□□□ 0.27
RB1P06400 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RB1P06400 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
RB1P06400 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.72■□□□□ 0.27
RB1P06400 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RB1P06400 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 FAM197Y7-201ENST00000432892 766 ntBASIC16.72■□□□□ 0.27
RB1P06400 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.72■□□□□ 0.27
RB1P06400 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.72■□□□□ 0.27
RB1P06400 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.72■□□□□ 0.27
RB1P06400 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 AC107373.2-201ENST00000607735 490 ntBASIC16.72■□□□□ 0.27
RB1P06400 AC138951.2-201ENST00000623455 1161 ntBASIC16.72■□□□□ 0.27
RB1P06400 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RB1P06400 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RB1P06400 AC138028.6-201ENST00000616106 1482 ntBASIC16.72■□□□□ 0.27
RB1P06400 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms