Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHOX2O60902 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.02■□□□□ 0.15
SHOX2O60902 CR383656.2-201ENST00000548656 2254 ntBASIC16.02■□□□□ 0.15
SHOX2O60902 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHOX2O60902 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
SHOX2O60902 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHOX2O60902 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHOX2O60902 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 PPT1-213ENST00000641319 2388 ntBASIC16.01■□□□□ 0.15
SHOX2O60902 MTHFR-210ENST00000641407 2387 ntBASIC16.01■□□□□ 0.15
SHOX2O60902 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SHOX2O60902 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 AC087163.2-201ENST00000457299 853 ntBASIC16.01■□□□□ 0.15
SHOX2O60902 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.01■□□□□ 0.15
SHOX2O60902 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.01■□□□□ 0.15
SHOX2O60902 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.01■□□□□ 0.15
SHOX2O60902 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.01■□□□□ 0.15
SHOX2O60902 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.01■□□□□ 0.15
SHOX2O60902 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.01■□□□□ 0.15
SHOX2O60902 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHOX2O60902 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
SHOX2O60902 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SHOX2O60902 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SHOX2O60902 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC16■□□□□ 0.15
SHOX2O60902 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16■□□□□ 0.15
SHOX2O60902 AC211429.1-201ENST00000415277 523 ntBASIC16■□□□□ 0.15
SHOX2O60902 AL645929.1-201ENST00000420084 975 ntBASIC16■□□□□ 0.15
SHOX2O60902 TSPY22P-201ENST00000427496 604 ntBASIC16■□□□□ 0.15
SHOX2O60902 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SHOX2O60902 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16■□□□□ 0.15
SHOX2O60902 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16■□□□□ 0.15
SHOX2O60902 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16■□□□□ 0.15
SHOX2O60902 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16■□□□□ 0.15
SHOX2O60902 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16■□□□□ 0.15
SHOX2O60902 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
SHOX2O60902 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SHOX2O60902 AP001350.2-201ENST00000625104 1094 ntBASIC16■□□□□ 0.15
SHOX2O60902 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 SLC9A7P1-202ENST00000556476 2239 ntBASIC16■□□□□ 0.15
SHOX2O60902 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SHOX2O60902 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16■□□□□ 0.15
SHOX2O60902 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16■□□□□ 0.15
SHOX2O60902 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
SHOX2O60902 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms