Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
MSH4O15457 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 AC015922.1-201ENST00000421102 1152 ntBASIC17.84■□□□□ 0.45
MSH4O15457 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 SLED1-202ENST00000512051 380 ntBASIC17.84■□□□□ 0.45
MSH4O15457 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.84■□□□□ 0.45
MSH4O15457 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 AC190387.1-201ENST00000551683 408 ntBASIC17.84■□□□□ 0.45
MSH4O15457 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.84■□□□□ 0.45
MSH4O15457 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 AP005117.1-202ENST00000581724 1908 ntBASIC17.84■□□□□ 0.45
MSH4O15457 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH4O15457 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH4O15457 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH4O15457 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSH4O15457 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.83■□□□□ 0.45
MSH4O15457 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
MSH4O15457 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSH4O15457 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSH4O15457 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
MSH4O15457 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSH4O15457 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSH4O15457 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
MSH4O15457 TNRC18P3-201ENST00000441896 2691 ntBASIC17.83■□□□□ 0.44
MSH4O15457 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.83■□□□□ 0.44
MSH4O15457 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.83■□□□□ 0.44
MSH4O15457 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.83■□□□□ 0.44
MSH4O15457 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.83■□□□□ 0.44
MSH4O15457 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH4O15457 API5-211ENST00000534695 560 ntTSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 TPRX2P-201ENST00000535362 881 ntBASIC17.83■□□□□ 0.44
MSH4O15457 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
MSH4O15457 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 AL391069.4-201ENST00000609583 481 ntBASIC17.83■□□□□ 0.44
MSH4O15457 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
MSH4O15457 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.83■□□□□ 0.44
MSH4O15457 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
MSH4O15457 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSH4O15457 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.83■□□□□ 0.44
MSH4O15457 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
MSH4O15457 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.82■□□□□ 0.44
MSH4O15457 TOMM22P5-201ENST00000416399 439 ntBASIC17.82■□□□□ 0.44
MSH4O15457 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 DFFBP1-201ENST00000433250 979 ntBASIC17.82■□□□□ 0.44
MSH4O15457 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.82■□□□□ 0.44
MSH4O15457 CRB3P1-201ENST00000449338 276 ntBASIC17.82■□□□□ 0.44
MSH4O15457 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH4O15457 AC093004.1-201ENST00000508850 424 ntBASIC17.82■□□□□ 0.44
MSH4O15457 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.82■□□□□ 0.44
MSH4O15457 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms