Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM38O00635 HLA-V-204ENST00000476601 1289 ntBASIC16.13■□□□□ 0.17
TRIM38O00635 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 SPDYE22P-201ENST00000582158 798 ntBASIC16.13■□□□□ 0.17
TRIM38O00635 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM38O00635 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.13■□□□□ 0.17
TRIM38O00635 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.13■□□□□ 0.17
TRIM38O00635 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRIM38O00635 AC144831.1-201ENST00000573312 2656 ntBASIC16.12■□□□□ 0.17
TRIM38O00635 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM38O00635 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRIM38O00635 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRIM38O00635 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 HLA-H-201ENST00000383620 1096 ntBASIC16.12■□□□□ 0.17
TRIM38O00635 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
TRIM38O00635 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM38O00635 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM38O00635 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 AC025048.6-201ENST00000634326 1161 ntBASIC16.12■□□□□ 0.17
TRIM38O00635 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRIM38O00635 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM38O00635 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM38O00635 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.11■□□□□ 0.17
TRIM38O00635 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM38O00635 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM38O00635 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms