Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 FOXO1B-201ENST00000504678 1527 ntBASIC15.42■□□□□ 0.06
SLC28A1O00337 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.42■□□□□ 0.06
SLC28A1O00337 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC28A1O00337 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SLC28A1O00337 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 BNIP3P1-202ENST00000550043 1585 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
SLC28A1O00337 AL355306.1-201ENST00000415580 579 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 MED15P5-201ENST00000423150 992 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.41■□□□□ 0.06
SLC28A1O00337 RNA5SP410-201ENST00000516285 106 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.41■□□□□ 0.06
SLC28A1O00337 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.41■□□□□ 0.06
SLC28A1O00337 AC106730.1-201ENST00000566722 1090 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 AC140113.2-201ENST00000604370 208 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.41■□□□□ 0.06
SLC28A1O00337 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SLC28A1O00337 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 AC090616.6-203ENST00000579186 1945 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC28A1O00337 AC006486.2-201ENST00000624246 2199 ntBASIC15.41■□□□□ 0.06
SLC28A1O00337 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC28A1O00337 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC28A1O00337 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 AL109954.1-202ENST00000564051 2148 ntBASIC15.4■□□□□ 0.06
SLC28A1O00337 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SLC28A1O00337 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC28A1O00337 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.4■□□□□ 0.06
SLC28A1O00337 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.4■□□□□ 0.06
SLC28A1O00337 BX640515.1-201ENST00000617215 977 ntBASIC15.4■□□□□ 0.06
SLC28A1O00337 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.4■□□□□ 0.06
SLC28A1O00337 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SLC28A1O00337 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC28A1O00337 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC28A1O00337 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SLC28A1O00337 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SLC28A1O00337 MIR600HG-201ENST00000449175 5984 ntBASIC15.4■□□□□ 0.06
SLC28A1O00337 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms