Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM49D1C9J1S8 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 AC079781.3-201ENST00000449110 356 ntBASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 PRYP6-201ENST00000514804 343 ntBASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM49D1C9J1S8 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AC018892.3-201ENST00000623986 2499 ntBASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AC140658.5-201ENST00000438532 169 ntBASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AC023141.13-201ENST00000604991 943 ntBASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms