Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CFAP54Q96N23 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CFAP54Q96N23 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.39■■□□□ 1.33
CFAP54Q96N23 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CFAP54Q96N23 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC23.38■■□□□ 1.33
CFAP54Q96N23 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.38■■□□□ 1.33
CFAP54Q96N23 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CFAP54Q96N23 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
CFAP54Q96N23 SRD5A1P1-201ENST00000442297 786 ntBASIC23.37■■□□□ 1.33
CFAP54Q96N23 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CFAP54Q96N23 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CFAP54Q96N23 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.36■■□□□ 1.33
CFAP54Q96N23 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.36■■□□□ 1.33
CFAP54Q96N23 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.36■■□□□ 1.33
CFAP54Q96N23 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CFAP54Q96N23 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CFAP54Q96N23 CA15P2-201ENST00000611168 834 ntBASIC23.36■■□□□ 1.33
CFAP54Q96N23 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CFAP54Q96N23 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CFAP54Q96N23 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CFAP54Q96N23 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.35■■□□□ 1.33
CFAP54Q96N23 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CFAP54Q96N23 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CFAP54Q96N23 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.35■■□□□ 1.33
CFAP54Q96N23 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CFAP54Q96N23 AC027682.1-201ENST00000562846 899 ntBASIC23.35■■□□□ 1.33
CFAP54Q96N23 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CFAP54Q96N23 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CFAP54Q96N23 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CFAP54Q96N23 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CFAP54Q96N23 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CFAP54Q96N23 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.34■■□□□ 1.33
CFAP54Q96N23 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.34■■□□□ 1.33
CFAP54Q96N23 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.34■■□□□ 1.33
CFAP54Q96N23 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.34■■□□□ 1.33
CFAP54Q96N23 AL031602.1-201ENST00000633169 911 ntBASIC23.34■■□□□ 1.33
CFAP54Q96N23 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.34■■□□□ 1.33
CFAP54Q96N23 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
CFAP54Q96N23 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
CFAP54Q96N23 AF131216.4-201ENST00000638924 1588 ntBASIC23.33■■□□□ 1.33
CFAP54Q96N23 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
CFAP54Q96N23 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CFAP54Q96N23 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.32■■□□□ 1.32
CFAP54Q96N23 AP004833.2-201ENST00000532228 1454 ntBASIC23.32■■□□□ 1.32
CFAP54Q96N23 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.32■■□□□ 1.32
CFAP54Q96N23 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.32■■□□□ 1.32
CFAP54Q96N23 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.32■■□□□ 1.32
CFAP54Q96N23 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CFAP54Q96N23 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CFAP54Q96N23 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CFAP54Q96N23 RAP2CP1-201ENST00000605103 478 ntBASIC23.31■■□□□ 1.32
CFAP54Q96N23 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CFAP54Q96N23 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CFAP54Q96N23 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.31■■□□□ 1.32
CFAP54Q96N23 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.31■■□□□ 1.32
CFAP54Q96N23 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.31■■□□□ 1.32
CFAP54Q96N23 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CFAP54Q96N23 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.31■■□□□ 1.32
CFAP54Q96N23 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CFAP54Q96N23 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CFAP54Q96N23 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CFAP54Q96N23 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CFAP54Q96N23 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CFAP54Q96N23 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CFAP54Q96N23 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CFAP54Q96N23 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CFAP54Q96N23 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CFAP54Q96N23 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CFAP54Q96N23 MIR4767-201ENST00000582827 78 ntBASIC23.29■■□□□ 1.32
CFAP54Q96N23 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CFAP54Q96N23 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CFAP54Q96N23 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.29■■□□□ 1.32
CFAP54Q96N23 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CFAP54Q96N23 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
CFAP54Q96N23 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CFAP54Q96N23 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.28■■□□□ 1.32
CFAP54Q96N23 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.28■■□□□ 1.32
CFAP54Q96N23 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CFAP54Q96N23 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CFAP54Q96N23 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
CFAP54Q96N23 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.28■■□□□ 1.32
CFAP54Q96N23 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.28■■□□□ 1.32
CFAP54Q96N23 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CFAP54Q96N23 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.27■■□□□ 1.32
CFAP54Q96N23 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.27■■□□□ 1.32
CFAP54Q96N23 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.27■■□□□ 1.32
CFAP54Q96N23 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
CFAP54Q96N23 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.27■■□□□ 1.32
CFAP54Q96N23 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.27■■□□□ 1.31
CFAP54Q96N23 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.27■■□□□ 1.31
CFAP54Q96N23 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.26■■□□□ 1.31
CFAP54Q96N23 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CFAP54Q96N23 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.26■■□□□ 1.31
CFAP54Q96N23 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.26■■□□□ 1.31
CFAP54Q96N23 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CFAP54Q96N23 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.26■■□□□ 1.31
CFAP54Q96N23 AC011551.1-201ENST00000614101 683 ntBASIC23.26■■□□□ 1.31
CFAP54Q96N23 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC23.26■■□□□ 1.31
CFAP54Q96N23 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CFAP54Q96N23 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms