Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SMC1BQ8NDV3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SMC1BQ8NDV3 SYT6-210ENST00000641643 1587 ntBASIC28.3■■■□□ 2.12
SMC1BQ8NDV3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SMC1BQ8NDV3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.3■■■□□ 2.12
SMC1BQ8NDV3 KRT18P5-201ENST00000436075 1291 ntBASIC28.3■■■□□ 2.12
SMC1BQ8NDV3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SMC1BQ8NDV3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
SMC1BQ8NDV3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SMC1BQ8NDV3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
SMC1BQ8NDV3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SMC1BQ8NDV3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.28■■■□□ 2.12
SMC1BQ8NDV3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SMC1BQ8NDV3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.27■■■□□ 2.12
SMC1BQ8NDV3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
SMC1BQ8NDV3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.27■■■□□ 2.12
SMC1BQ8NDV3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.27■■■□□ 2.12
SMC1BQ8NDV3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.27■■■□□ 2.12
SMC1BQ8NDV3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.12
SMC1BQ8NDV3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SMC1BQ8NDV3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
SMC1BQ8NDV3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SMC1BQ8NDV3 AC004911.1-201ENST00000416316 871 ntBASIC28.26■■■□□ 2.11
SMC1BQ8NDV3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.25■■■□□ 2.11
SMC1BQ8NDV3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMC1BQ8NDV3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.25■■■□□ 2.11
SMC1BQ8NDV3 AC092171.4-201ENST00000609130 632 ntBASIC28.25■■■□□ 2.11
SMC1BQ8NDV3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.25■■■□□ 2.11
SMC1BQ8NDV3 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.25■■■□□ 2.11
SMC1BQ8NDV3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC28.24■■■□□ 2.11
SMC1BQ8NDV3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 AC008764.7-201ENST00000593779 1081 ntBASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SMC1BQ8NDV3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SMC1BQ8NDV3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SMC1BQ8NDV3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.22■■■□□ 2.11
SMC1BQ8NDV3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SMC1BQ8NDV3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.22■■■□□ 2.11
SMC1BQ8NDV3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SMC1BQ8NDV3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC28.21■■■□□ 2.11
SMC1BQ8NDV3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SMC1BQ8NDV3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC28.21■■■□□ 2.11
SMC1BQ8NDV3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.21■■■□□ 2.11
SMC1BQ8NDV3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.21■■■□□ 2.11
SMC1BQ8NDV3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
SMC1BQ8NDV3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC28.2■■■□□ 2.1
SMC1BQ8NDV3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.2■■■□□ 2.1
SMC1BQ8NDV3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.2■■■□□ 2.1
SMC1BQ8NDV3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SMC1BQ8NDV3 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC28.19■■■□□ 2.1
SMC1BQ8NDV3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
SMC1BQ8NDV3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SMC1BQ8NDV3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.19■■■□□ 2.1
SMC1BQ8NDV3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.19■■■□□ 2.1
SMC1BQ8NDV3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC28.19■■■□□ 2.1
SMC1BQ8NDV3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.18■■■□□ 2.1
SMC1BQ8NDV3 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
SMC1BQ8NDV3 AC099791.1-201ENST00000416440 715 ntBASIC28.18■■■□□ 2.1
SMC1BQ8NDV3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.18■■■□□ 2.1
SMC1BQ8NDV3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 HLA-L-209ENST00000420110 1011 ntBASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 AL139393.2-201ENST00000608721 2025 ntBASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.17■■■□□ 2.1
SMC1BQ8NDV3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SMC1BQ8NDV3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.15■■■□□ 2.1
SMC1BQ8NDV3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms