Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 FOXO3B-201ENST00000395675 1928 ntBASIC21.75■■□□□ 1.07
BEST3Q8N1M1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BEST3Q8N1M1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
BEST3Q8N1M1 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.74■■□□□ 1.07
BEST3Q8N1M1 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.74■■□□□ 1.07
BEST3Q8N1M1 AC021242.3-201ENST00000607598 1377 ntBASIC21.74■■□□□ 1.07
BEST3Q8N1M1 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 AC010501.1-201ENST00000606270 1962 ntBASIC21.73■■□□□ 1.07
BEST3Q8N1M1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BEST3Q8N1M1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 UNC93B8-201ENST00000511903 705 ntBASIC21.72■■□□□ 1.07
BEST3Q8N1M1 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 AC097639.1-201ENST00000565519 1891 ntBASIC21.72■■□□□ 1.07
BEST3Q8N1M1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BEST3Q8N1M1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BEST3Q8N1M1 TSPY9P-201ENST00000440215 945 ntBASIC21.71■■□□□ 1.07
BEST3Q8N1M1 TSPY11P-201ENST00000442607 1045 ntBASIC21.71■■□□□ 1.07
BEST3Q8N1M1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.71■■□□□ 1.07
BEST3Q8N1M1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BEST3Q8N1M1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BEST3Q8N1M1 AC092803.2-201ENST00000564287 1899 ntBASIC21.71■■□□□ 1.07
BEST3Q8N1M1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.7■■□□□ 1.06
BEST3Q8N1M1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BEST3Q8N1M1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 KRT16P3-201ENST00000439127 1283 ntBASIC21.69■■□□□ 1.06
BEST3Q8N1M1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.69■■□□□ 1.06
BEST3Q8N1M1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BEST3Q8N1M1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BEST3Q8N1M1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 AC092028.1-203ENST00000608262 953 ntBASIC21.66■■□□□ 1.06
BEST3Q8N1M1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BEST3Q8N1M1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms