Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.38■■□□□ 1.17
RETREG3Q86VR2 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.38■■□□□ 1.17
RETREG3Q86VR2 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RETREG3Q86VR2 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.38■■□□□ 1.17
RETREG3Q86VR2 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
RETREG3Q86VR2 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RETREG3Q86VR2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RETREG3Q86VR2 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC22.37■■□□□ 1.17
RETREG3Q86VR2 METRNL-202ENST00000570778 967 ntTSL 5 BASIC22.37■■□□□ 1.17
RETREG3Q86VR2 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
RETREG3Q86VR2 MOB2-207ENST00000614710 705 ntTSL 5 BASIC22.37■■□□□ 1.17
RETREG3Q86VR2 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RETREG3Q86VR2 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 MIR3648-2-201ENST00000581792 180 ntBASIC22.36■■□□□ 1.17
RETREG3Q86VR2 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 MIR3648-1-201ENST00000615959 180 ntBASIC22.36■■□□□ 1.17
RETREG3Q86VR2 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RETREG3Q86VR2 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RETREG3Q86VR2 HLA-L-211ENST00000482052 1765 ntBASIC22.33■■□□□ 1.17
RETREG3Q86VR2 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.33■■□□□ 1.17
RETREG3Q86VR2 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RETREG3Q86VR2 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RETREG3Q86VR2 C9orf163-202ENST00000624034 2573 ntBASIC22.33■■□□□ 1.16
RETREG3Q86VR2 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RETREG3Q86VR2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RETREG3Q86VR2 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.32■■□□□ 1.16
RETREG3Q86VR2 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
RETREG3Q86VR2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RETREG3Q86VR2 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RETREG3Q86VR2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RETREG3Q86VR2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RETREG3Q86VR2 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
RETREG3Q86VR2 MIR3960-201ENST00000583311 91 ntBASIC22.31■■□□□ 1.16
RETREG3Q86VR2 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RETREG3Q86VR2 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 AC060814.1-201ENST00000554326 538 ntBASIC22.29■■□□□ 1.16
RETREG3Q86VR2 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RETREG3Q86VR2 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 AC016575.1-201ENST00000607026 382 ntBASIC22.28■■□□□ 1.16
RETREG3Q86VR2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RETREG3Q86VR2 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.27■■□□□ 1.16
RETREG3Q86VR2 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
RETREG3Q86VR2 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
RETREG3Q86VR2 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RETREG3Q86VR2 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RETREG3Q86VR2 SMPD5-203ENST00000639008 1464 ntBASIC22.27■■□□□ 1.16
RETREG3Q86VR2 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.26■■□□□ 1.15
RETREG3Q86VR2 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
RETREG3Q86VR2 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RETREG3Q86VR2 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.26■■□□□ 1.15
RETREG3Q86VR2 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
RETREG3Q86VR2 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
RETREG3Q86VR2 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.26■■□□□ 1.15
RETREG3Q86VR2 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RETREG3Q86VR2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms