Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHFQ7M4L6 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHFQ7M4L6 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHFQ7M4L6 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHFQ7M4L6 AC004812.2-201ENST00000611079 2094 ntBASIC21.13■□□□□ 0.97
SHFQ7M4L6 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.12■□□□□ 0.97
SHFQ7M4L6 MIR3960-201ENST00000583311 91 ntBASIC21.12■□□□□ 0.97
SHFQ7M4L6 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SHFQ7M4L6 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHFQ7M4L6 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHFQ7M4L6 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHFQ7M4L6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHFQ7M4L6 AL157400.5-201ENST00000507624 621 ntBASIC21.11■□□□□ 0.97
SHFQ7M4L6 AC025884.2-201ENST00000553429 711 ntBASIC21.11■□□□□ 0.97
SHFQ7M4L6 AC060814.1-201ENST00000554326 538 ntBASIC21.11■□□□□ 0.97
SHFQ7M4L6 MIR7108-201ENST00000614319 87 ntBASIC21.11■□□□□ 0.97
SHFQ7M4L6 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHFQ7M4L6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SHFQ7M4L6 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.1■□□□□ 0.97
SHFQ7M4L6 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.1■□□□□ 0.97
SHFQ7M4L6 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SHFQ7M4L6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.1■□□□□ 0.97
SHFQ7M4L6 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.1■□□□□ 0.97
SHFQ7M4L6 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHFQ7M4L6 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.1■□□□□ 0.97
SHFQ7M4L6 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHFQ7M4L6 ABCB10P4-201ENST00000566803 2184 ntBASIC21.09■□□□□ 0.97
SHFQ7M4L6 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHFQ7M4L6 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.09■□□□□ 0.97
SHFQ7M4L6 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.09■□□□□ 0.97
SHFQ7M4L6 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHFQ7M4L6 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHFQ7M4L6 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.08■□□□□ 0.97
SHFQ7M4L6 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SHFQ7M4L6 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.08■□□□□ 0.97
SHFQ7M4L6 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.08■□□□□ 0.97
SHFQ7M4L6 AC141586.4-201ENST00000624558 1573 ntBASIC21.08■□□□□ 0.97
SHFQ7M4L6 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHFQ7M4L6 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHFQ7M4L6 AC012676.1-201ENST00000574705 1949 ntBASIC21.08■□□□□ 0.96
SHFQ7M4L6 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.07■□□□□ 0.96
SHFQ7M4L6 SMPD5-203ENST00000639008 1464 ntBASIC21.07■□□□□ 0.96
SHFQ7M4L6 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SHFQ7M4L6 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.07■□□□□ 0.96
SHFQ7M4L6 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHFQ7M4L6 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHFQ7M4L6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.07■□□□□ 0.96
SHFQ7M4L6 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SHFQ7M4L6 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHFQ7M4L6 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHFQ7M4L6 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SHFQ7M4L6 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHFQ7M4L6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.06■□□□□ 0.96
SHFQ7M4L6 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHFQ7M4L6 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHFQ7M4L6 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.05■□□□□ 0.96
SHFQ7M4L6 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHFQ7M4L6 MIR639-201ENST00000384974 98 ntBASIC21.05■□□□□ 0.96
SHFQ7M4L6 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHFQ7M4L6 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.05■□□□□ 0.96
SHFQ7M4L6 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHFQ7M4L6 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHFQ7M4L6 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHFQ7M4L6 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHFQ7M4L6 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SHFQ7M4L6 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHFQ7M4L6 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
SHFQ7M4L6 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.03■□□□□ 0.96
SHFQ7M4L6 AC092296.2-201ENST00000589470 999 ntBASIC21.03■□□□□ 0.96
SHFQ7M4L6 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHFQ7M4L6 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHFQ7M4L6 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SHFQ7M4L6 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHFQ7M4L6 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.03■□□□□ 0.96
SHFQ7M4L6 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SHFQ7M4L6 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms