Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CKS1BP61024 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CKS1BP61024 CEBPA-AS1-201ENST00000592982 2198 ntBASIC16.2■□□□□ 0.18
CKS1BP61024 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CKS1BP61024 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.2■□□□□ 0.18
CKS1BP61024 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CKS1BP61024 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CKS1BP61024 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC16.19■□□□□ 0.18
CKS1BP61024 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CKS1BP61024 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC16.19■□□□□ 0.18
CKS1BP61024 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CKS1BP61024 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 EFS-203ENST00000429593 2610 ntTSL 2 BASIC16.18■□□□□ 0.18
CKS1BP61024 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CKS1BP61024 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CKS1BP61024 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CKS1BP61024 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CKS1BP61024 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CKS1BP61024 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CKS1BP61024 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC16.16■□□□□ 0.18
CKS1BP61024 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CKS1BP61024 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 ERN1-208ENST00000606895 2068 ntBASIC16.16■□□□□ 0.18
CKS1BP61024 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC16.16■□□□□ 0.18
CKS1BP61024 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 AC021231.2-201ENST00000594613 730 ntBASIC16.16■□□□□ 0.18
CKS1BP61024 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CKS1BP61024 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CKS1BP61024 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CKS1BP61024 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CKS1BP61024 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CKS1BP61024 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CKS1BP61024 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CKS1BP61024 AL162393.1-201ENST00000437852 946 ntBASIC16.15■□□□□ 0.18
CKS1BP61024 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CKS1BP61024 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CKS1BP61024 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.15■□□□□ 0.18
CKS1BP61024 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CKS1BP61024 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.15■□□□□ 0.18
CKS1BP61024 AC142381.3-201ENST00000568208 1670 ntBASIC16.14■□□□□ 0.18
CKS1BP61024 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CKS1BP61024 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CKS1BP61024 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC16.14■□□□□ 0.17
CKS1BP61024 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CKS1BP61024 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC16.14■□□□□ 0.17
CKS1BP61024 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC16.14■□□□□ 0.17
CKS1BP61024 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CKS1BP61024 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC16.14■□□□□ 0.17
CKS1BP61024 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CKS1BP61024 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CKS1BP61024 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CKS1BP61024 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CKS1BP61024 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CKS1BP61024 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CKS1BP61024 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CKS1BP61024 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC16.13■□□□□ 0.17
CKS1BP61024 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC16.13■□□□□ 0.17
CKS1BP61024 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC16.13■□□□□ 0.17
CKS1BP61024 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CKS1BP61024 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.13■□□□□ 0.17
CKS1BP61024 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CKS1BP61024 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CKS1BP61024 NRG1-221ENST00000614767 762 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms