Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC6A1P30531 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC6A1P30531 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC6A1P30531 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SLC6A1P30531 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC6A1P30531 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.19■□□□□ 0.82
SLC6A1P30531 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.19■□□□□ 0.82
SLC6A1P30531 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.19■□□□□ 0.82
SLC6A1P30531 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SLC6A1P30531 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SLC6A1P30531 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC6A1P30531 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SLC6A1P30531 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
SLC6A1P30531 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SLC6A1P30531 MIR4449-201ENST00000578365 66 ntBASIC20.18■□□□□ 0.82
SLC6A1P30531 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.18■□□□□ 0.82
SLC6A1P30531 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SLC6A1P30531 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SLC6A1P30531 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.18■□□□□ 0.82
SLC6A1P30531 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.17■□□□□ 0.82
SLC6A1P30531 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.17■□□□□ 0.82
SLC6A1P30531 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC6A1P30531 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SLC6A1P30531 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
SLC6A1P30531 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
SLC6A1P30531 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SLC6A1P30531 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 AL024507.2-201ENST00000606070 2574 ntBASIC20.16■□□□□ 0.82
SLC6A1P30531 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC6A1P30531 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SLC6A1P30531 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SLC6A1P30531 AC233723.2-201ENST00000623798 2106 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SLC6A1P30531 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC6A1P30531 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC6A1P30531 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L13-201ENST00000554103 1267 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L15-201ENST00000611059 1267 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L23-201ENST00000615195 1269 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L24-201ENST00000617576 1269 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L22-201ENST00000618238 1269 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L20-201ENST00000619712 1269 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L21-201ENST00000622058 1269 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L10-201ENST00000622460 1267 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 DUX4L25-201ENST00000624915 1269 ntBASIC20.15■□□□□ 0.82
SLC6A1P30531 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.15■□□□□ 0.82
SLC6A1P30531 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC6A1P30531 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC6A1P30531 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.15■□□□□ 0.82
SLC6A1P30531 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC6A1P30531 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.14■□□□□ 0.82
SLC6A1P30531 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SLC6A1P30531 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
SLC6A1P30531 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC6A1P30531 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC6A1P30531 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SLC6A1P30531 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SLC6A1P30531 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC6A1P30531 AC016575.1-201ENST00000607026 382 ntBASIC20.14■□□□□ 0.81
SLC6A1P30531 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 CR559946.2-201ENST00000623684 991 ntBASIC20.13■□□□□ 0.81
SLC6A1P30531 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.13■□□□□ 0.81
SLC6A1P30531 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SLC6A1P30531 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC6A1P30531 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 AC110285.7-201ENST00000624417 1536 ntBASIC20.12■□□□□ 0.81
SLC6A1P30531 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SLC6A1P30531 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC6A1P30531 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC6A1P30531 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC6A1P30531 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.11■□□□□ 0.81
SLC6A1P30531 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.11■□□□□ 0.81
SLC6A1P30531 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC6A1P30531 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC6A1P30531 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC6A1P30531 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.11■□□□□ 0.81
SLC6A1P30531 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC6A1P30531 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SLC6A1P30531 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms