Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 BX664725.1-201ENST00000438252 379 ntBASIC21.4■■□□□ 1.02
FREM3P0C091 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
FREM3P0C091 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.4■■□□□ 1.02
FREM3P0C091 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.4■■□□□ 1.02
FREM3P0C091 AL031848.2-201ENST00000607670 837 ntBASIC21.4■■□□□ 1.02
FREM3P0C091 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FREM3P0C091 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FREM3P0C091 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.4■■□□□ 1.02
FREM3P0C091 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FREM3P0C091 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
FREM3P0C091 LONRF2P2-201ENST00000439212 571 ntBASIC21.4■■□□□ 1.02
FREM3P0C091 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.4■■□□□ 1.02
FREM3P0C091 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.4■■□□□ 1.02
FREM3P0C091 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
FREM3P0C091 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
FREM3P0C091 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
FREM3P0C091 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
FREM3P0C091 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
FREM3P0C091 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FREM3P0C091 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FREM3P0C091 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.38■■□□□ 1.01
FREM3P0C091 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.38■■□□□ 1.01
FREM3P0C091 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
FREM3P0C091 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
FREM3P0C091 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FREM3P0C091 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.37■■□□□ 1.01
FREM3P0C091 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.37■■□□□ 1.01
FREM3P0C091 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.37■■□□□ 1.01
FREM3P0C091 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FREM3P0C091 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FREM3P0C091 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FREM3P0C091 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FREM3P0C091 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
FREM3P0C091 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
FREM3P0C091 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.36■■□□□ 1.01
FREM3P0C091 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FREM3P0C091 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FREM3P0C091 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FREM3P0C091 AC239859.2-201ENST00000444165 318 ntBASIC21.36■■□□□ 1.01
FREM3P0C091 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
FREM3P0C091 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FREM3P0C091 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FREM3P0C091 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.35■■□□□ 1.01
FREM3P0C091 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.35■■□□□ 1.01
FREM3P0C091 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
FREM3P0C091 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
FREM3P0C091 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.35■■□□□ 1.01
FREM3P0C091 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
FREM3P0C091 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FREM3P0C091 MIR4787-201ENST00000607364 84 ntBASIC21.34■■□□□ 1.01
FREM3P0C091 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FREM3P0C091 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FREM3P0C091 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.34■■□□□ 1.01
FREM3P0C091 AC131212.1-201ENST00000613771 668 ntBASIC21.34■■□□□ 1.01
FREM3P0C091 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FREM3P0C091 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
FREM3P0C091 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FREM3P0C091 AC120024.1-201ENST00000562672 995 ntBASIC21.33■■□□□ 1.01
FREM3P0C091 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
FREM3P0C091 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.33■■□□□ 1
FREM3P0C091 AL592295.1-201ENST00000400984 884 ntBASIC21.32■■□□□ 1
FREM3P0C091 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.32■■□□□ 1
FREM3P0C091 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FREM3P0C091 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
FREM3P0C091 THA1P-201ENST00000590384 1145 ntBASIC21.32■■□□□ 1
FREM3P0C091 AC137630.3-201ENST00000607245 391 ntBASIC21.32■■□□□ 1
FREM3P0C091 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.31■■□□□ 1
FREM3P0C091 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.31■■□□□ 1
FREM3P0C091 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
FREM3P0C091 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
FREM3P0C091 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FREM3P0C091 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.31■■□□□ 1
FREM3P0C091 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.31■■□□□ 1
FREM3P0C091 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
FREM3P0C091 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FREM3P0C091 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
FREM3P0C091 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FREM3P0C091 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.29■■□□□ 1
FREM3P0C091 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FREM3P0C091 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FREM3P0C091 FOXO3B-201ENST00000395675 1928 ntBASIC21.29■■□□□ 1
FREM3P0C091 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FREM3P0C091 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
FREM3P0C091 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FREM3P0C091 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.29■■□□□ 1
FREM3P0C091 KRT125P-201ENST00000546827 989 ntBASIC21.29■■□□□ 1
FREM3P0C091 AC011551.1-201ENST00000614101 683 ntBASIC21.28■■□□□ 1
FREM3P0C091 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 316.9 ms