Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC37.16■■■■□ 3.54
PCF11O94913 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC37.16■■■■□ 3.54
PCF11O94913 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
PCF11O94913 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
PCF11O94913 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC37.16■■■■□ 3.54
PCF11O94913 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC37.16■■■■□ 3.54
PCF11O94913 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC37.15■■■■□ 3.54
PCF11O94913 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
PCF11O94913 LSM4-201ENST00000252816 986 ntTSL 2 BASIC37.15■■■■□ 3.54
PCF11O94913 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC37.15■■■■□ 3.54
PCF11O94913 AL121749.1-202ENST00000609313 2153 ntBASIC37.15■■■■□ 3.54
PCF11O94913 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
PCF11O94913 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC37.14■■■■□ 3.54
PCF11O94913 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC37.14■■■■□ 3.54
PCF11O94913 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
PCF11O94913 SNX5-217ENST00000606557 1087 ntBASIC37.13■■■■□ 3.53
PCF11O94913 AC092666.2-201ENST00000613287 246 ntBASIC37.13■■■■□ 3.53
PCF11O94913 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC37.13■■■■□ 3.53
PCF11O94913 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC37.13■■■■□ 3.53
PCF11O94913 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
PCF11O94913 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC37.12■■■■□ 3.53
PCF11O94913 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC37.12■■■■□ 3.53
PCF11O94913 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
PCF11O94913 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC37.12■■■■□ 3.53
PCF11O94913 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC37.12■■■■□ 3.53
PCF11O94913 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC37.11■■■■□ 3.53
PCF11O94913 AC097639.1-201ENST00000565519 1891 ntBASIC37.11■■■■□ 3.53
PCF11O94913 QDPR-206ENST00000508623 601 ntTSL 3 BASIC37.11■■■■□ 3.53
PCF11O94913 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC37.11■■■■□ 3.53
PCF11O94913 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC37.11■■■■□ 3.53
PCF11O94913 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC37.11■■■■□ 3.53
PCF11O94913 AL512631.2-201ENST00000604634 923 ntBASIC37.11■■■■□ 3.53
PCF11O94913 MIR6724-1-201ENST00000616420 92 ntBASIC37.1■■■■□ 3.53
PCF11O94913 MIR6724-2-201ENST00000616483 92 ntBASIC37.1■■■■□ 3.53
PCF11O94913 MIR6724-4-201ENST00000617390 92 ntBASIC37.1■■■■□ 3.53
PCF11O94913 MIR6724-3-201ENST00000622482 92 ntBASIC37.1■■■■□ 3.53
PCF11O94913 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC37.1■■■■□ 3.53
PCF11O94913 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC37.09■■■■□ 3.53
PCF11O94913 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC37.09■■■■□ 3.53
PCF11O94913 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC37.09■■■■□ 3.53
PCF11O94913 TK2-202ENST00000417693 1046 ntTSL 2 BASIC37.09■■■■□ 3.53
PCF11O94913 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC37.09■■■■□ 3.53
PCF11O94913 AC010997.5-201ENST00000609182 354 ntBASIC37.09■■■■□ 3.53
PCF11O94913 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC37.08■■■■□ 3.53
PCF11O94913 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC37.08■■■■□ 3.53
PCF11O94913 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC37.08■■■■□ 3.53
PCF11O94913 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
PCF11O94913 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC37.08■■■■□ 3.53
PCF11O94913 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC37.08■■■■□ 3.53
PCF11O94913 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC37.08■■■■□ 3.53
PCF11O94913 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC37.08■■■■□ 3.53
PCF11O94913 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC37.07■■■■□ 3.52
PCF11O94913 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC37.07■■■■□ 3.52
PCF11O94913 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.52
PCF11O94913 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC37.07■■■■□ 3.52
PCF11O94913 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
PCF11O94913 CD72-202ENST00000378430 585 ntTSL 3 BASIC37.06■■■■□ 3.52
PCF11O94913 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC37.06■■■■□ 3.52
PCF11O94913 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC37.06■■■■□ 3.52
PCF11O94913 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC37.06■■■■□ 3.52
PCF11O94913 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC37.05■■■■□ 3.52
PCF11O94913 AC092803.2-201ENST00000564287 1899 ntBASIC37.05■■■■□ 3.52
PCF11O94913 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC37.05■■■■□ 3.52
PCF11O94913 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC37.05■■■■□ 3.52
PCF11O94913 EXOG-217ENST00000630638 197 ntTSL 5 BASIC37.05■■■■□ 3.52
PCF11O94913 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
PCF11O94913 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC37.05■■■■□ 3.52
PCF11O94913 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC37.05■■■■□ 3.52
PCF11O94913 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC37.04■■■■□ 3.52
PCF11O94913 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC37.04■■■■□ 3.52
PCF11O94913 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC37.04■■■■□ 3.52
PCF11O94913 RPP21-222ENST00000433076 577 ntTSL 2 BASIC37.04■■■■□ 3.52
PCF11O94913 SRR-208ENST00000576848 588 ntTSL 4 BASIC37.04■■■■□ 3.52
PCF11O94913 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
PCF11O94913 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC37.03■■■■□ 3.52
PCF11O94913 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC37.03■■■■□ 3.52
PCF11O94913 RASSF1-AS1-201ENST00000629828 790 ntBASIC37.03■■■■□ 3.52
PCF11O94913 AC090877.2-201ENST00000558441 1738 ntBASIC37.03■■■■□ 3.52
PCF11O94913 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC37.02■■■■□ 3.52
PCF11O94913 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC37.02■■■■□ 3.52
PCF11O94913 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC37.02■■■■□ 3.52
PCF11O94913 MIR3621-201ENST00000580529 85 ntBASIC37.02■■■■□ 3.52
PCF11O94913 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC37.02■■■■□ 3.52
PCF11O94913 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC37.02■■■■□ 3.52
PCF11O94913 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
PCF11O94913 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC37.01■■■■□ 3.52
PCF11O94913 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC37.01■■■■□ 3.52
PCF11O94913 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC37.01■■■■□ 3.51
PCF11O94913 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC37.01■■■■□ 3.51
PCF11O94913 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
PCF11O94913 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC37■■■■□ 3.51
PCF11O94913 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC37■■■■□ 3.51
PCF11O94913 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC37■■■■□ 3.51
PCF11O94913 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC37■■■■□ 3.51
PCF11O94913 CLTA-210ENST00000540080 989 ntTSL 2 BASIC37■■■■□ 3.51
PCF11O94913 MIR4466-201ENST00000606121 54 ntBASIC37■■■■□ 3.51
PCF11O94913 NALT1-201ENST00000429224 738 ntTSL 5 BASIC37■■■■□ 3.51
PCF11O94913 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC37■■■■□ 3.51
PCF11O94913 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC37■■■■□ 3.51
PCF11O94913 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC37■■■■□ 3.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms