Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDCBPO00560 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.86■□□□□ 0.77
SDCBPO00560 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDCBPO00560 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SDCBPO00560 ECEL1P2-201ENST00000461596 1295 ntBASIC19.86■□□□□ 0.77
SDCBPO00560 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SDCBPO00560 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
SDCBPO00560 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.85■□□□□ 0.77
SDCBPO00560 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SDCBPO00560 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDCBPO00560 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDCBPO00560 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SDCBPO00560 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.84■□□□□ 0.77
SDCBPO00560 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.84■□□□□ 0.77
SDCBPO00560 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SDCBPO00560 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SDCBPO00560 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SDCBPO00560 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SDCBPO00560 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SDCBPO00560 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SDCBPO00560 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SDCBPO00560 GPX1-201ENST00000419349 1106 ntBASIC19.83■□□□□ 0.77
SDCBPO00560 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SDCBPO00560 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SDCBPO00560 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SDCBPO00560 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.83■□□□□ 0.76
SDCBPO00560 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.82■□□□□ 0.76
SDCBPO00560 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDCBPO00560 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDCBPO00560 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.82■□□□□ 0.76
SDCBPO00560 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.82■□□□□ 0.76
SDCBPO00560 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SDCBPO00560 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SDCBPO00560 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDCBPO00560 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDCBPO00560 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SDCBPO00560 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SDCBPO00560 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.81■□□□□ 0.76
SDCBPO00560 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDCBPO00560 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDCBPO00560 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDCBPO00560 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.81■□□□□ 0.76
SDCBPO00560 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
SDCBPO00560 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDCBPO00560 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.8■□□□□ 0.76
SDCBPO00560 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.8■□□□□ 0.76
SDCBPO00560 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SDCBPO00560 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SDCBPO00560 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SDCBPO00560 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.79■□□□□ 0.76
SDCBPO00560 AC068473.5-201ENST00000616428 2072 ntBASIC19.79■□□□□ 0.76
SDCBPO00560 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SDCBPO00560 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.79■□□□□ 0.76
SDCBPO00560 RP9P-202ENST00000450133 1212 ntBASIC19.79■□□□□ 0.76
SDCBPO00560 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.79■□□□□ 0.76
SDCBPO00560 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SDCBPO00560 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.79■□□□□ 0.76
SDCBPO00560 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDCBPO00560 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SDCBPO00560 AC012676.1-201ENST00000574705 1949 ntBASIC19.78■□□□□ 0.76
SDCBPO00560 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDCBPO00560 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SDCBPO00560 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDCBPO00560 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.78■□□□□ 0.76
SDCBPO00560 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.78■□□□□ 0.76
SDCBPO00560 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDCBPO00560 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SDCBPO00560 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SDCBPO00560 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDCBPO00560 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDCBPO00560 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDCBPO00560 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.77■□□□□ 0.76
SDCBPO00560 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SDCBPO00560 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SDCBPO00560 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDCBPO00560 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SDCBPO00560 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDCBPO00560 AC141586.4-201ENST00000624558 1573 ntBASIC19.77■□□□□ 0.76
SDCBPO00560 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDCBPO00560 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SDCBPO00560 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDCBPO00560 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SDCBPO00560 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms