Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 AC093724.1-201ENST00000448659 1027 ntBASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 AL161645.1-201ENST00000622716 1255 ntBASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 WASH6P-202ENST00000359512 1437 ntBASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 SSR4P1-203ENST00000599569 2260 ntBASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 AC002056.1-201ENST00000395613 760 ntBASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 AC023274.1-201ENST00000418278 595 ntBASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 TNRC18P2-201ENST00000417666 2714 ntBASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RHBDD3Q9Y3P4 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 PCDHA3-202ENST00000532566 4594 ntBASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 AC073439.1-201ENST00000624121 1774 ntBASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 AC112191.1-201ENST00000523689 701 ntBASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.05□□□□□ -0.16
RHBDD3Q9Y3P4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms