Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 AL512361.1-201ENST00000554200 418 ntBASIC17.01■□□□□ 0.31
CISHQ9NSE2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 AC027796.2-201ENST00000575326 344 ntBASIC17.01■□□□□ 0.31
CISHQ9NSE2 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 AC097359.3-201ENST00000603982 1210 ntBASIC17.01■□□□□ 0.31
CISHQ9NSE2 MIR6069-201ENST00000620069 79 ntBASIC17.01■□□□□ 0.31
CISHQ9NSE2 AL590560.3-201ENST00000623350 461 ntBASIC17.01■□□□□ 0.31
CISHQ9NSE2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CISHQ9NSE2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.01■□□□□ 0.31
CISHQ9NSE2 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.01■□□□□ 0.31
CISHQ9NSE2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17■□□□□ 0.31
CISHQ9NSE2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17■□□□□ 0.31
CISHQ9NSE2 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17■□□□□ 0.31
CISHQ9NSE2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17■□□□□ 0.31
CISHQ9NSE2 NME4-207ENST00000450036 985 ntTSL 3 BASIC17■□□□□ 0.31
CISHQ9NSE2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17■□□□□ 0.31
CISHQ9NSE2 AL390754.1-201ENST00000619088 582 ntBASIC17■□□□□ 0.31
CISHQ9NSE2 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17■□□□□ 0.31
CISHQ9NSE2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17■□□□□ 0.31
CISHQ9NSE2 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17■□□□□ 0.31
CISHQ9NSE2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17■□□□□ 0.31
CISHQ9NSE2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 AC136604.1-201ENST00000418535 575 ntBASIC16.99■□□□□ 0.31
CISHQ9NSE2 AC241585.1-201ENST00000433527 519 ntBASIC16.99■□□□□ 0.31
CISHQ9NSE2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CISHQ9NSE2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CISHQ9NSE2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms