Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AC011467.4-201ENST00000594891 528 ntBASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AP001282.1-201ENST00000531301 1499 ntBASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 CYP2T1P-202ENST00000641596 2535 ntBASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM39Q9HCM9 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AL080243.2-201ENST00000418783 582 ntBASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AC087499.5-201ENST00000452760 1342 ntBASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM39Q9HCM9 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms