Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PIF1Q9H611 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PIF1Q9H611 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PIF1Q9H611 AC092127.1-201ENST00000567093 3455 ntBASIC15.37■□□□□ 0.05
PIF1Q9H611 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PIF1Q9H611 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.37■□□□□ 0.05
PIF1Q9H611 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.37■□□□□ 0.05
PIF1Q9H611 AL109954.1-202ENST00000564051 2148 ntBASIC15.37■□□□□ 0.05
PIF1Q9H611 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.37■□□□□ 0.05
PIF1Q9H611 AC106881.1-201ENST00000605849 3329 ntBASIC15.37■□□□□ 0.05
PIF1Q9H611 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.36■□□□□ 0.05
PIF1Q9H611 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
PIF1Q9H611 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PIF1Q9H611 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PIF1Q9H611 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 AC018712.1-201ENST00000455767 687 ntBASIC15.36■□□□□ 0.05
PIF1Q9H611 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.36■□□□□ 0.05
PIF1Q9H611 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.36■□□□□ 0.05
PIF1Q9H611 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.36■□□□□ 0.05
PIF1Q9H611 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.36■□□□□ 0.05
PIF1Q9H611 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.36■□□□□ 0.05
PIF1Q9H611 AC008667.4-201ENST00000607370 168 ntBASIC15.36■□□□□ 0.05
PIF1Q9H611 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
PIF1Q9H611 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.36■□□□□ 0.05
PIF1Q9H611 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PIF1Q9H611 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.35■□□□□ 0.05
PIF1Q9H611 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AC087481.3-201ENST00000602886 1894 ntBASIC15.35■□□□□ 0.05
PIF1Q9H611 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
PIF1Q9H611 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AC097376.2-205ENST00000610159 5334 ntBASIC15.35■□□□□ 0.05
PIF1Q9H611 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.35■□□□□ 0.05
PIF1Q9H611 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.35■□□□□ 0.05
PIF1Q9H611 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.35■□□□□ 0.05
PIF1Q9H611 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AP002469.2-201ENST00000531724 424 ntBASIC15.35■□□□□ 0.05
PIF1Q9H611 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.35■□□□□ 0.05
PIF1Q9H611 AL031008.1-201ENST00000619963 541 ntBASIC15.35■□□□□ 0.05
PIF1Q9H611 AC004790.2-201ENST00000623588 572 ntBASIC15.35■□□□□ 0.05
PIF1Q9H611 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.35■□□□□ 0.05
PIF1Q9H611 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PIF1Q9H611 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PIF1Q9H611 SNX18-202ENST00000343017 3140 ntBASIC15.34■□□□□ 0.05
PIF1Q9H611 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms