Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.27■□□□□ 0.52
USP28Q96RU2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
USP28Q96RU2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 AC091951.1-201ENST00000512854 2465 ntBASIC18.27■□□□□ 0.52
USP28Q96RU2 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.27■□□□□ 0.52
USP28Q96RU2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 HLA-H-201ENST00000383620 1096 ntBASIC18.27■□□□□ 0.52
USP28Q96RU2 MIR574-201ENST00000385209 96 ntBASIC18.27■□□□□ 0.52
USP28Q96RU2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.27■□□□□ 0.52
USP28Q96RU2 TIMM8BP1-201ENST00000452384 211 ntBASIC18.27■□□□□ 0.52
USP28Q96RU2 ALG1L5P-201ENST00000482043 771 ntBASIC18.27■□□□□ 0.52
USP28Q96RU2 AC069335.1-201ENST00000489972 472 ntBASIC18.27■□□□□ 0.52
USP28Q96RU2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.27■□□□□ 0.52
USP28Q96RU2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.27■□□□□ 0.52
USP28Q96RU2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.27■□□□□ 0.52
USP28Q96RU2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.52
USP28Q96RU2 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.27■□□□□ 0.52
USP28Q96RU2 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
USP28Q96RU2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.27■□□□□ 0.52
USP28Q96RU2 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP28Q96RU2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.27■□□□□ 0.51
USP28Q96RU2 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP28Q96RU2 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP28Q96RU2 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.27■□□□□ 0.51
USP28Q96RU2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.27■□□□□ 0.51
USP28Q96RU2 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
USP28Q96RU2 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP28Q96RU2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.27■□□□□ 0.51
USP28Q96RU2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
USP28Q96RU2 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.26■□□□□ 0.51
USP28Q96RU2 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
USP28Q96RU2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.26■□□□□ 0.51
USP28Q96RU2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.26■□□□□ 0.51
USP28Q96RU2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.26■□□□□ 0.51
USP28Q96RU2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 SLC25A39P2-201ENST00000537614 270 ntBASIC18.26■□□□□ 0.51
USP28Q96RU2 C20orf181-201ENST00000623918 480 ntBASIC18.26■□□□□ 0.51
USP28Q96RU2 AC084121.4-201ENST00000641598 221 ntBASIC18.26■□□□□ 0.51
USP28Q96RU2 AF228730.8-201ENST00000642140 221 ntBASIC18.26■□□□□ 0.51
USP28Q96RU2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.26■□□□□ 0.51
USP28Q96RU2 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
USP28Q96RU2 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP28Q96RU2 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.25■□□□□ 0.51
USP28Q96RU2 AP3S2-216ENST00000617003 1561 ntBASIC18.25■□□□□ 0.51
USP28Q96RU2 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.25■□□□□ 0.51
USP28Q96RU2 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms