Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HPS3Q969F9 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.71■□□□□ 0.43
HPS3Q969F9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
HPS3Q969F9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
HPS3Q969F9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
HPS3Q969F9 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.7■□□□□ 0.42
HPS3Q969F9 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.7■□□□□ 0.42
HPS3Q969F9 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.7■□□□□ 0.42
HPS3Q969F9 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.7■□□□□ 0.42
HPS3Q969F9 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.7■□□□□ 0.42
HPS3Q969F9 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.7■□□□□ 0.42
HPS3Q969F9 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 KRT8P37-201ENST00000451609 1420 ntBASIC17.7■□□□□ 0.42
HPS3Q969F9 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HPS3Q969F9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HPS3Q969F9 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HPS3Q969F9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.69■□□□□ 0.42
HPS3Q969F9 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS3Q969F9 AZGP1P1-201ENST00000411909 902 ntBASIC17.69■□□□□ 0.42
HPS3Q969F9 AL353705.2-201ENST00000428243 662 ntBASIC17.69■□□□□ 0.42
HPS3Q969F9 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS3Q969F9 MTND6P24-201ENST00000440466 518 ntBASIC17.69■□□□□ 0.42
HPS3Q969F9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.69■□□□□ 0.42
HPS3Q969F9 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.69■□□□□ 0.42
HPS3Q969F9 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS3Q969F9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS3Q969F9 AC006538.3-201ENST00000612495 578 ntBASIC17.69■□□□□ 0.42
HPS3Q969F9 AP001059.3-201ENST00000619053 235 ntBASIC17.69■□□□□ 0.42
HPS3Q969F9 AC139530.3-201ENST00000620344 690 ntBASIC17.69■□□□□ 0.42
HPS3Q969F9 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HPS3Q969F9 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.69■□□□□ 0.42
HPS3Q969F9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.69■□□□□ 0.42
HPS3Q969F9 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HPS3Q969F9 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS3Q969F9 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.68■□□□□ 0.42
HPS3Q969F9 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.68■□□□□ 0.42
HPS3Q969F9 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.68■□□□□ 0.42
HPS3Q969F9 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS3Q969F9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HPS3Q969F9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.68■□□□□ 0.42
HPS3Q969F9 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS3Q969F9 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HPS3Q969F9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 HLA-J-203ENST00000494367 1087 ntBASIC17.68■□□□□ 0.42
HPS3Q969F9 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.68■□□□□ 0.42
HPS3Q969F9 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.68■□□□□ 0.42
HPS3Q969F9 AP001160.2-201ENST00000596071 487 ntBASIC17.68■□□□□ 0.42
HPS3Q969F9 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS3Q969F9 RN7SL828P-201ENST00000607615 303 ntBASIC17.68■□□□□ 0.42
HPS3Q969F9 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.68■□□□□ 0.42
HPS3Q969F9 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS3Q969F9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS3Q969F9 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms