Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AP001160.2-201ENST00000596071 487 ntBASIC14.21□□□□□ -0.13
SKA3Q8IX90 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SKA3Q8IX90 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SKA3Q8IX90 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SKA3Q8IX90 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
SKA3Q8IX90 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
SKA3Q8IX90 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SKA3Q8IX90 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.14
SKA3Q8IX90 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.14
SKA3Q8IX90 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.14
SKA3Q8IX90 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AC092384.3-202ENST00000564646 2873 ntBASIC14.2□□□□□ -0.14
SKA3Q8IX90 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 HAUS4P1-201ENST00000406739 1145 ntBASIC14.2□□□□□ -0.14
SKA3Q8IX90 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AC245100.5-201ENST00000452108 331 ntBASIC14.2□□□□□ -0.14
SKA3Q8IX90 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AC026150.2-201ENST00000564693 1156 ntBASIC14.2□□□□□ -0.14
SKA3Q8IX90 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AL603832.2-201ENST00000566195 2125 ntBASIC14.2□□□□□ -0.14
SKA3Q8IX90 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SKA3Q8IX90 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
SKA3Q8IX90 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
SKA3Q8IX90 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SKA3Q8IX90 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms