Protein–RNA interactions for Protein: Q8IWF9

CCDC83, Coiled-coil domain-containing protein 83, humanhuman

Predictions only

Length 413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC83Q8IWF9 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC83Q8IWF9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SPDYE11-202ENST00000450699 704 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 AC079140.1-201ENST00000508039 487 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 PGAM5P1-201ENST00000518923 814 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SPDYE9P-201ENST00000570642 692 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 AC026120.1-201ENST00000611536 926 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SPDYE10P-202ENST00000612005 668 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SPDYE8P-202ENST00000612377 668 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC83Q8IWF9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 REXO1L1P-202ENST00000608646 1974 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 YBX2P1-201ENST00000394192 760 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 TIMM8BP1-201ENST00000452384 211 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 RN7SL589P-201ENST00000481268 310 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 FAM86C2P-203ENST00000528684 1004 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 LINC01225-203ENST00000563550 1244 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 AC040169.1-201ENST00000565382 521 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 AC138035.3-201ENST00000622706 2791 ntBASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC83Q8IWF9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC83Q8IWF9 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC83Q8IWF9 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC83Q8IWF9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC83Q8IWF9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC83Q8IWF9 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms